Transcription factor | FOXC1 | ||||||||
Model | FOXC1_HUMAN.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 15 | ||||||||
Quality | C | ||||||||
Consensus | bnhTGTTTACWTAvS | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 26 | ||||||||
TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
TF subfamily | FOXC{3.3.1.3} | ||||||||
HGNC | 3800 | ||||||||
EntrezGene | 2296 | ||||||||
UniProt ID | FOXC1_HUMAN | ||||||||
UniProt AC | Q12948 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 3.5 | 12.5 | 4.5 | 5.5 |
02 | 9.0 | 2.0 | 9.0 | 6.0 |
03 | 7.0 | 4.0 | 2.0 | 13.0 |
04 | 0.0 | 0.0 | 0.0 | 26.0 |
05 | 0.0 | 0.0 | 26.0 | 0.0 |
06 | 1.0 | 0.0 | 0.0 | 25.0 |
07 | 1.0 | 0.0 | 0.0 | 25.0 |
08 | 0.0 | 0.0 | 1.0 | 25.0 |
09 | 25.0 | 0.0 | 0.0 | 1.0 |
10 | 0.0 | 19.0 | 0.0 | 7.0 |
11 | 6.0 | 3.0 | 0.0 | 17.0 |
12 | 0.0 | 5.0 | 0.0 | 21.0 |
13 | 17.0 | 0.0 | 0.0 | 9.0 |
14 | 12.0 | 5.0 | 7.0 | 2.0 |
15 | 1.0 | 7.0 | 15.0 | 3.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.528 | 0.599 | -0.319 | -0.147 |
02 | 0.294 | -0.955 | 0.294 | -0.071 |
03 | 0.066 | -0.418 | -0.955 | 0.636 |
04 | -2.195 | -2.195 | -2.195 | 1.299 |
05 | -2.195 | -2.195 | 1.299 | -2.195 |
06 | -1.394 | -2.195 | -2.195 | 1.261 |
07 | -1.394 | -2.195 | -2.195 | 1.261 |
08 | -2.195 | -2.195 | -1.394 | 1.261 |
09 | 1.261 | -2.195 | -2.195 | -1.394 |
10 | -2.195 | 0.997 | -2.195 | 0.066 |
11 | -0.071 | -0.651 | -2.195 | 0.89 |
12 | -2.195 | -0.23 | -2.195 | 1.093 |
13 | 0.89 | -2.195 | -2.195 | 0.294 |
14 | 0.561 | -0.23 | 0.066 | -0.955 |
15 | -1.394 | 0.066 | 0.771 | -0.651 |