Model info
| Transcription factor | FOXA2 | ||||||||
| Model | FOXA2_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Consensus | nbnnTGTTTACWYWdnn | ||||||||
| wAUC | 0.930489380769686 | ||||||||
| Best AUC | 0.9560507722671349 | ||||||||
| Benchmark datasets | 5 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
| TF subfamily | FOXA{3.3.1.1} | ||||||||
| HGNC | 5022 | ||||||||
| EntrezGene | 3170 | ||||||||
| UniProt ID | FOXA2_HUMAN | ||||||||
| UniProt AC | Q9Y261 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 8.994 | 20.934 | 30.21 | 24.286 | 29.861 | 32.202 | 7.957 | 40.324 | 11.987 | 57.746 | 29.529 | 42.206 | 8.844 | 75.932 | 36.495 | 34.235 |
| 02 | 15.122 | 19.532 | 15.156 | 9.877 | 64.531 | 45.602 | 5.133 | 71.549 | 6.94 | 37.347 | 31.096 | 28.807 | 11.376 | 37.415 | 56.98 | 35.28 |
| 03 | 41.413 | 22.211 | 18.472 | 15.872 | 43.167 | 19.732 | 15.976 | 61.022 | 27.23 | 31.357 | 24.72 | 25.058 | 10.931 | 31.547 | 43.698 | 59.336 |
| 04 | 4.886 | 0.0 | 0.0 | 117.855 | 0.0 | 1.976 | 0.0 | 102.872 | 0.953 | 0.0 | 1.136 | 100.778 | 0.0 | 0.0 | 0.0 | 161.289 |
| 05 | 0.0 | 0.0 | 5.839 | 0.0 | 0.0 | 0.0 | 1.976 | 0.0 | 0.0 | 0.0 | 1.136 | 0.0 | 83.387 | 0.0 | 399.406 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 83.387 | 0.0 | 0.0 | 0.0 | 0.0 | 1.968 | 0.0 | 0.0 | 406.388 | 0.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.968 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 38.32 | 451.455 |
| 08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.121 | 35.199 | 0.0 | 3.038 | 50.584 | 399.8 |
| 09 | 0.0 | 0.0 | 0.0 | 0.0 | 3.038 | 0.0 | 0.0 | 0.0 | 51.729 | 0.0 | 1.977 | 0.0 | 306.173 | 0.0 | 127.817 | 1.01 |
| 10 | 0.0 | 306.791 | 1.947 | 52.201 | 0.0 | 0.0 | 0.0 | 0.0 | 1.957 | 92.079 | 0.0 | 35.759 | 0.0 | 0.0 | 0.0 | 1.01 |
| 11 | 1.957 | 0.0 | 0.0 | 0.0 | 164.976 | 44.22 | 0.0 | 189.674 | 0.0 | 1.947 | 0.0 | 0.0 | 9.105 | 7.157 | 0.0 | 72.707 |
| 12 | 20.361 | 85.186 | 17.239 | 53.252 | 3.067 | 23.385 | 3.94 | 22.932 | 0.0 | 0.0 | 0.0 | 0.0 | 4.99 | 101.359 | 15.591 | 140.44 |
| 13 | 22.445 | 0.917 | 0.966 | 4.091 | 140.241 | 11.077 | 6.05 | 52.562 | 27.949 | 0.0 | 2.915 | 5.907 | 69.453 | 1.962 | 9.482 | 135.727 |
| 14 | 78.474 | 15.884 | 132.046 | 33.685 | 11.994 | 1.962 | 0.0 | 0.0 | 0.936 | 3.906 | 9.713 | 4.858 | 14.886 | 31.793 | 108.784 | 42.823 |
| 15 | 16.47 | 32.809 | 31.274 | 25.738 | 13.003 | 16.019 | 2.826 | 21.696 | 39.538 | 81.629 | 75.76 | 53.615 | 7.743 | 31.066 | 22.749 | 19.809 |
| 16 | 18.034 | 14.008 | 38.662 | 6.049 | 46.631 | 35.635 | 13.017 | 66.241 | 23.698 | 32.955 | 48.984 | 26.972 | 15.142 | 16.847 | 58.958 | 29.912 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -1.199 | -0.378 | -0.017 | -0.232 | -0.028 | 0.046 | -1.316 | 0.269 | -0.922 | 0.625 | -0.039 | 0.314 | -1.215 | 0.897 | 0.17 | 0.107 |
| 02 | -0.696 | -0.446 | -0.694 | -1.109 | 0.735 | 0.391 | -1.729 | 0.838 | -1.446 | 0.193 | 0.012 | -0.064 | -0.973 | 0.194 | 0.612 | 0.136 |
| 03 | 0.295 | -0.32 | -0.501 | -0.649 | 0.336 | -0.436 | -0.643 | 0.68 | -0.119 | 0.02 | -0.215 | -0.201 | -1.011 | 0.026 | 0.348 | 0.652 |
| 04 | -1.775 | -4.386 | -4.386 | 1.335 | -4.386 | -2.578 | -4.386 | 1.199 | -3.145 | -4.386 | -3.017 | 1.179 | -4.386 | -4.386 | -4.386 | 1.648 |
| 05 | -4.386 | -4.386 | -1.609 | -4.386 | -4.386 | -4.386 | -2.578 | -4.386 | -4.386 | -4.386 | -3.017 | -4.386 | 0.99 | -4.386 | 2.553 | -4.386 |
| 06 | -4.386 | -4.386 | -4.386 | 0.99 | -4.386 | -4.386 | -4.386 | -4.386 | -2.581 | -4.386 | -4.386 | 2.57 | -4.386 | -4.386 | -4.386 | -4.386 |
| 07 | -4.386 | -4.386 | -4.386 | -2.581 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | 0.218 | 2.675 |
| 08 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -4.386 | -2.183 | 0.134 | -4.386 | -2.207 | 0.493 | 2.554 |
| 09 | -4.386 | -4.386 | -4.386 | -4.386 | -2.207 | -4.386 | -4.386 | -4.386 | 0.516 | -4.386 | -2.578 | -4.386 | 2.288 | -4.386 | 1.416 | -3.103 |
| 10 | -4.386 | 2.29 | -2.59 | 0.525 | -4.386 | -4.386 | -4.386 | -4.386 | -2.586 | 1.089 | -4.386 | 0.15 | -4.386 | -4.386 | -4.386 | -3.103 |
| 11 | -2.586 | -4.386 | -4.386 | -4.386 | 1.67 | 0.36 | -4.386 | 1.809 | -4.386 | -2.59 | -4.386 | -4.386 | -1.187 | -1.417 | -4.386 | 0.854 |
| 12 | -0.405 | 1.011 | -0.568 | 0.544 | -2.198 | -0.269 | -1.973 | -0.289 | -4.386 | -4.386 | -4.386 | -4.386 | -1.756 | 1.185 | -0.667 | 1.51 |
| 13 | -0.31 | -3.172 | -3.136 | -1.939 | 1.508 | -0.999 | -1.576 | 0.531 | -0.094 | -4.386 | -2.243 | -1.598 | 0.808 | -2.584 | -1.148 | 1.476 |
| 14 | 0.93 | -0.649 | 1.448 | 0.091 | -0.922 | -2.584 | -4.386 | -4.386 | -3.158 | -1.981 | -1.125 | -1.781 | -0.712 | 0.033 | 1.255 | 0.328 |
| 15 | -0.613 | 0.065 | 0.017 | -0.175 | -0.843 | -0.64 | -2.271 | -0.343 | 0.249 | 0.969 | 0.895 | 0.551 | -1.342 | 0.011 | -0.296 | -0.432 |
| 16 | -0.524 | -0.771 | 0.227 | -1.576 | 0.413 | 0.146 | -0.842 | 0.761 | -0.256 | 0.069 | 0.461 | -0.129 | -0.695 | -0.591 | 0.645 | -0.027 |