Model info
| Transcription factor | Foxa1 | ||||||||
| Model | FOXA1_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Consensus | TGTTTRCWYWb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 967 | ||||||||
| TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
| TF subfamily | FOXA{3.3.1.1} | ||||||||
| MGI | 1347472 | ||||||||
| EntrezGene | 15375 | ||||||||
| UniProt ID | FOXA1_MOUSE | ||||||||
| UniProt AC | P35582 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.564 | 2.191 | 2.853 | 868.224 |
| 02 | 186.247 | 4.965 | 695.315 | 4.303 |
| 03 | 0.662 | 9.587 | 2.648 | 877.934 |
| 04 | 0.662 | 4.634 | 17.865 | 867.67 |
| 05 | 4.634 | 1.324 | 69.797 | 815.076 |
| 06 | 428.057 | 8.11 | 424.232 | 30.432 |
| 07 | 10.571 | 732.103 | 2.814 | 145.344 |
| 08 | 253.229 | 116.568 | 2.814 | 518.221 |
| 09 | 58.346 | 323.195 | 55.582 | 453.708 |
| 10 | 359.458 | 9.919 | 35.698 | 485.756 |
| 11 | 112.128 | 132.166 | 421.616 | 224.921 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.455 | -4.055 | -3.898 | 1.355 |
| 02 | -0.177 | -3.517 | 1.133 | -3.621 |
| 03 | -4.555 | -2.99 | -3.944 | 1.366 |
| 04 | -4.555 | -3.568 | -2.44 | 1.354 |
| 05 | -3.568 | -4.308 | -1.144 | 1.292 |
| 06 | 0.65 | -3.13 | 0.641 | -1.944 |
| 07 | -2.906 | 1.185 | -3.907 | -0.423 |
| 08 | 0.128 | -0.641 | -3.907 | 0.84 |
| 09 | -1.318 | 0.37 | -1.366 | 0.708 |
| 10 | 0.476 | -2.961 | -1.792 | 0.776 |
| 11 | -0.679 | -0.517 | 0.635 | 0.01 |