Transcription factor | Foxa1 | ||||||||
Model | FOXA1_MOUSE.H10MO.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 11 | ||||||||
Quality | B | ||||||||
Consensus | TGTTTRCWYWb | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 967 | ||||||||
TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
TF subfamily | FOXA{3.3.1.1} | ||||||||
MGI | 1347472 | ||||||||
EntrezGene | 15375 | ||||||||
UniProt ID | FOXA1_MOUSE | ||||||||
UniProt AC | P35582 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 17.564 | 2.191 | 2.853 | 868.224 |
02 | 186.247 | 4.965 | 695.315 | 4.303 |
03 | 0.662 | 9.587 | 2.648 | 877.934 |
04 | 0.662 | 4.634 | 17.865 | 867.67 |
05 | 4.634 | 1.324 | 69.797 | 815.076 |
06 | 428.057 | 8.11 | 424.232 | 30.432 |
07 | 10.571 | 732.103 | 2.814 | 145.344 |
08 | 253.229 | 116.568 | 2.814 | 518.221 |
09 | 58.346 | 323.195 | 55.582 | 453.708 |
10 | 359.458 | 9.919 | 35.698 | 485.756 |
11 | 112.128 | 132.166 | 421.616 | 224.921 |
A | C | G | T | |
---|---|---|---|---|
01 | -2.455 | -4.055 | -3.898 | 1.355 |
02 | -0.177 | -3.517 | 1.133 | -3.621 |
03 | -4.555 | -2.99 | -3.944 | 1.366 |
04 | -4.555 | -3.568 | -2.44 | 1.354 |
05 | -3.568 | -4.308 | -1.144 | 1.292 |
06 | 0.65 | -3.13 | 0.641 | -1.944 |
07 | -2.906 | 1.185 | -3.907 | -0.423 |
08 | 0.128 | -0.641 | -3.907 | 0.84 |
09 | -1.318 | 0.37 | -1.366 | 0.708 |
10 | 0.476 | -2.961 | -1.792 | 0.776 |
11 | -0.679 | -0.517 | 0.635 | 0.01 |