Model info
| Transcription factor | FOXA1 | ||||||||
| Model | FOXA1_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Consensus | dTGTTTACWYWdb | ||||||||
| wAUC | 0.8776041095935726 | ||||||||
| Best AUC | 0.9482331154742838 | ||||||||
| Benchmark datasets | 21 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
| TF subfamily | FOXA{3.3.1.1} | ||||||||
| HGNC | 5021 | ||||||||
| EntrezGene | 3169 | ||||||||
| UniProt ID | FOXA1_HUMAN | ||||||||
| UniProt AC | P55317 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 199.488 | 91.164 | 93.514 | 115.835 |
| 02 | 4.134 | 1.876 | 1.943 | 492.047 |
| 03 | 179.261 | 0.0 | 320.739 | 0.0 |
| 04 | 10.801 | 0.0 | 1.02 | 488.179 |
| 05 | 4.399 | 2.037 | 38.051 | 455.513 |
| 06 | 0.0 | 0.0 | 67.515 | 432.485 |
| 07 | 371.349 | 11.913 | 115.821 | 0.917 |
| 08 | 0.0 | 455.278 | 5.045 | 39.676 |
| 09 | 223.015 | 31.006 | 0.999 | 244.98 |
| 10 | 10.089 | 160.106 | 54.724 | 275.082 |
| 11 | 223.351 | 2.175 | 7.967 | 266.507 |
| 12 | 117.628 | 72.8 | 199.643 | 109.929 |
| 13 | 50.079 | 174.679 | 103.784 | 171.458 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.463 | -0.311 | -0.286 | -0.075 |
| 02 | -3.102 | -3.608 | -3.589 | 1.361 |
| 03 | 0.357 | -4.4 | 0.935 | -4.4 |
| 04 | -2.327 | -4.4 | -3.895 | 1.353 |
| 05 | -3.057 | -3.562 | -1.162 | 1.284 |
| 06 | -4.4 | -4.4 | -0.606 | 1.232 |
| 07 | 1.081 | -2.24 | -0.075 | -3.936 |
| 08 | -4.4 | 1.284 | -2.954 | -1.121 |
| 09 | 0.574 | -1.358 | -3.904 | 0.667 |
| 10 | -2.386 | 0.245 | -0.81 | 0.782 |
| 11 | 0.575 | -3.525 | -2.587 | 0.751 |
| 12 | -0.06 | -0.532 | 0.464 | -0.127 |
| 13 | -0.897 | 0.331 | -0.183 | 0.313 |