Model info
| Transcription factor | Esr2 | ||||||||
| Model | ESR2_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 15 | ||||||||
| Quality | B | ||||||||
| Consensus | RGGTCAbdbYRvYYY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 382 | ||||||||
| TF family | Steroid hormone receptors (NR3){2.1.1} | ||||||||
| TF subfamily | ER-like receptors (NR3A&B){2.1.1.2} | ||||||||
| MGI | 109392 | ||||||||
| EntrezGene | 13983 | ||||||||
| UniProt ID | ESR2_MOUSE | ||||||||
| UniProt AC | O08537 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 165.321 | 6.187 | 174.226 | 3.458 |
| 02 | 18.981 | 0.0 | 289.864 | 40.348 |
| 03 | 6.14 | 15.104 | 327.948 | 0.0 |
| 04 | 6.823 | 26.705 | 35.914 | 279.751 |
| 05 | 0.682 | 348.511 | 0.0 | 0.0 |
| 06 | 331.111 | 2.047 | 0.0 | 16.035 |
| 07 | 38.612 | 135.721 | 114.754 | 60.105 |
| 08 | 70.436 | 57.067 | 138.26 | 83.43 |
| 09 | 49.623 | 62.092 | 153.866 | 83.613 |
| 10 | 24.998 | 39.948 | 15.692 | 268.555 |
| 11 | 51.11 | 32.195 | 258.506 | 7.382 |
| 12 | 181.622 | 71.393 | 49.69 | 46.489 |
| 13 | 32.038 | 246.814 | 12.252 | 58.09 |
| 14 | 33.431 | 266.879 | 5.335 | 43.547 |
| 15 | 34.474 | 74.108 | 29.173 | 211.438 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.631 | -2.451 | 0.683 | -2.892 |
| 02 | -1.468 | -4.105 | 1.188 | -0.753 |
| 03 | -2.457 | -1.678 | 1.311 | -4.105 |
| 04 | -2.371 | -1.148 | -0.865 | 1.153 |
| 05 | -3.722 | 1.372 | -4.105 | -4.105 |
| 06 | 1.321 | -3.23 | -4.105 | -1.624 |
| 07 | -0.795 | 0.435 | 0.27 | -0.366 |
| 08 | -0.211 | -0.416 | 0.454 | -0.045 |
| 09 | -0.552 | -0.334 | 0.56 | -0.042 |
| 10 | -1.21 | -0.762 | -1.644 | 1.113 |
| 11 | -0.524 | -0.97 | 1.075 | -2.306 |
| 12 | 0.724 | -0.197 | -0.551 | -0.616 |
| 13 | -0.974 | 1.029 | -1.867 | -0.399 |
| 14 | -0.934 | 1.106 | -2.569 | -0.679 |
| 15 | -0.904 | -0.161 | -1.064 | 0.875 |