Model info
| Transcription factor | ERG | ||||||||
| Model | ERG_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | B | ||||||||
| Consensus | ddACCGGAAGTvv | ||||||||
| wAUC | 0.7953611445682518 | ||||||||
| Best AUC | 0.8445565837014505 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 2444 | ||||||||
| TF family | Ets-related factors{3.5.2} | ||||||||
| TF subfamily | Ets-like factors{3.5.2.1} | ||||||||
| HGNC | 3446 | ||||||||
| EntrezGene | 2078 | ||||||||
| UniProt ID | ERG_HUMAN | ||||||||
| UniProt AC | P11308 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1007.75 | 400.75 | 610.75 | 421.75 |
| 02 | 1110.0 | 296.0 | 720.0 | 315.0 |
| 03 | 2146.5 | 62.5 | 132.5 | 99.5 |
| 04 | 32.0 | 2362.0 | 30.0 | 17.0 |
| 05 | 29.0 | 2412.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 2441.0 | 0.0 |
| 07 | 0.0 | 0.0 | 2440.0 | 1.0 |
| 08 | 2441.0 | 0.0 | 0.0 | 0.0 |
| 09 | 2242.25 | 0.25 | 0.25 | 198.25 |
| 10 | 972.0 | 3.0 | 1464.0 | 2.0 |
| 11 | 21.25 | 223.25 | 32.25 | 2164.25 |
| 12 | 351.75 | 694.75 | 1158.75 | 235.75 |
| 13 | 583.5 | 882.5 | 738.5 | 236.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.5 | -0.419 | 0.001 | -0.368 |
| 02 | 0.597 | -0.72 | 0.165 | -0.658 |
| 03 | 1.255 | -2.251 | -1.516 | -1.797 |
| 04 | -2.892 | 1.351 | -2.953 | -3.475 |
| 05 | -2.985 | 1.372 | -5.749 | -5.749 |
| 06 | -5.749 | -5.749 | 1.384 | -5.749 |
| 07 | -5.749 | -5.749 | 1.383 | -5.335 |
| 08 | 1.384 | -5.749 | -5.749 | -5.749 |
| 09 | 1.299 | -5.629 | -5.629 | -1.118 |
| 10 | 0.464 | -4.818 | 0.873 | -5.043 |
| 11 | -3.273 | -1.0 | -2.885 | 1.264 |
| 12 | -0.549 | 0.129 | 0.64 | -0.946 |
| 13 | -0.045 | 0.368 | 0.19 | -0.943 |