Transcription factor | ERF | ||||||||
Model | ERF_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 20 | ||||||||
Quality | D | ||||||||
Consensus | WnSdTKhSKTTSGRbAYTnC | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 7 | ||||||||
TF family | Ets-related factors{3.5.2} | ||||||||
TF subfamily | Ets-like factors{3.5.2.1} | ||||||||
HGNC | 3444 | ||||||||
EntrezGene | 2077 | ||||||||
UniProt ID | ERF_HUMAN | ||||||||
UniProt AC | P50548 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 3.5 | 0.5 | 0.5 | 2.5 |
02 | 3.5 | 1.5 | 0.5 | 1.5 |
03 | 1.25 | 3.25 | 2.25 | 0.25 |
04 | 4.25 | 0.25 | 1.25 | 1.25 |
05 | 0.0 | 0.0 | 3.0 | 4.0 |
06 | 1.0 | 0.0 | 4.0 | 2.0 |
07 | 3.0 | 1.0 | 0.0 | 3.0 |
08 | 0.0 | 2.0 | 4.0 | 1.0 |
09 | 1.0 | 0.0 | 2.0 | 4.0 |
10 | 0.0 | 0.0 | 1.0 | 6.0 |
11 | 3.0 | 0.0 | 0.0 | 4.0 |
12 | 0.0 | 4.0 | 2.0 | 1.0 |
13 | 1.0 | 0.0 | 6.0 | 0.0 |
14 | 4.0 | 0.0 | 2.0 | 1.0 |
15 | 0.0 | 3.0 | 2.0 | 2.0 |
16 | 5.0 | 0.0 | 2.0 | 0.0 |
17 | 0.25 | 3.25 | 1.25 | 2.25 |
18 | 0.25 | 1.25 | 0.25 | 5.25 |
19 | 0.5 | 1.5 | 1.5 | 3.5 |
20 | 0.5 | 5.5 | 0.5 | 0.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.578 | -0.819 | -0.819 | 0.289 |
02 | 0.578 | -0.119 | -0.819 | -0.119 |
03 | -0.253 | 0.513 | 0.202 | -1.111 |
04 | 0.75 | -1.111 | -0.253 | -0.253 |
05 | -1.525 | -1.525 | 0.444 | 0.696 |
06 | -0.408 | -1.525 | 0.696 | 0.106 |
07 | 0.444 | -0.408 | -1.525 | 0.444 |
08 | -1.525 | 0.106 | 0.696 | -0.408 |
09 | -0.408 | -1.525 | 0.106 | 0.696 |
10 | -1.525 | -1.525 | -0.408 | 1.065 |
11 | 0.444 | -1.525 | -1.525 | 0.696 |
12 | -1.525 | 0.696 | 0.106 | -0.408 |
13 | -0.408 | -1.525 | 1.065 | -1.525 |
14 | 0.696 | -1.525 | 0.106 | -0.408 |
15 | -1.525 | 0.444 | 0.106 | 0.106 |
16 | 0.897 | -1.525 | 0.106 | -1.525 |
17 | -1.111 | 0.513 | -0.253 | 0.202 |
18 | -1.111 | -0.253 | -1.111 | 0.942 |
19 | -0.819 | -0.119 | -0.119 | 0.578 |
20 | -0.819 | 0.985 | -0.819 | -0.819 |