Transcription factor | EGR2 | ||||||||
Model | EGR2_HUMAN.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 11 | ||||||||
Quality | C | ||||||||
Consensus | dGvGKGGGCGK | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 23 | ||||||||
TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
TF subfamily | EGR factors{2.3.1.3} | ||||||||
HGNC | 3239 | ||||||||
EntrezGene | 1959 | ||||||||
UniProt ID | EGR2_HUMAN | ||||||||
UniProt AC | P11161 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 5.172 | 2.644 | 7.816 | 5.057 |
02 | 1.034 | 0.0 | 19.655 | 0.0 |
03 | 4.943 | 8.621 | 4.253 | 2.874 |
04 | 0.0 | 0.0 | 20.69 | 0.0 |
05 | 1.034 | 0.575 | 5.977 | 13.103 |
06 | 0.0 | 0.0 | 20.69 | 0.0 |
07 | 0.0 | 0.0 | 20.69 | 0.0 |
08 | 0.0 | 0.0 | 20.69 | 0.0 |
09 | 1.034 | 14.828 | 0.0 | 4.828 |
10 | 0.0 | 0.0 | 17.701 | 2.989 |
11 | 2.816 | 0.747 | 13.506 | 3.621 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.0 | -0.556 | 0.369 | -0.02 |
02 | -1.197 | -2.058 | 1.236 | -2.058 |
03 | -0.04 | 0.458 | -0.169 | -0.49 |
04 | -2.058 | -2.058 | 1.286 | -2.058 |
05 | -1.197 | -1.493 | 0.127 | 0.849 |
06 | -2.058 | -2.058 | 1.286 | -2.058 |
07 | -2.058 | -2.058 | 1.286 | -2.058 |
08 | -2.058 | -2.058 | 1.286 | -2.058 |
09 | -1.197 | 0.966 | -2.058 | -0.06 |
10 | -2.058 | -2.058 | 1.136 | -0.459 |
11 | -0.506 | -1.372 | 0.878 | -0.303 |