Model info
| Transcription factor | Egr1 | ||||||||
| Model | EGR1_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | nGCGKGGGYGK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2104 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
| TF subfamily | EGR factors{2.3.1.3} | ||||||||
| MGI | 95295 | ||||||||
| EntrezGene | 13653 | ||||||||
| UniProt ID | EGR1_MOUSE | ||||||||
| UniProt AC | P08046 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 285.897 | 355.779 | 600.935 | 644.414 |
| 02 | 83.035 | 113.692 | 1665.808 | 24.49 |
| 03 | 113.185 | 1562.986 | 35.147 | 175.707 |
| 04 | 6.829 | 1.868 | 1874.85 | 3.478 |
| 05 | 17.511 | 25.252 | 925.963 | 918.298 |
| 06 | 143.216 | 36.45 | 1702.385 | 4.974 |
| 07 | 48.106 | 124.169 | 1700.411 | 14.339 |
| 08 | 22.525 | 19.39 | 1845.11 | 0.0 |
| 09 | 168.149 | 1412.317 | 13.109 | 293.449 |
| 10 | 40.782 | 13.679 | 1803.338 | 29.226 |
| 11 | 170.947 | 122.404 | 1150.216 | 443.457 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.498 | -0.281 | 0.241 | 0.311 |
| 02 | -1.719 | -1.411 | 1.259 | -2.888 |
| 03 | -1.415 | 1.195 | -2.549 | -0.981 |
| 04 | -3.995 | -4.838 | 1.377 | -4.481 |
| 05 | -3.195 | -2.86 | 0.672 | 0.664 |
| 06 | -1.183 | -2.514 | 1.28 | -4.235 |
| 07 | -2.249 | -1.324 | 1.279 | -3.374 |
| 08 | -2.965 | -3.103 | 1.361 | -5.526 |
| 09 | -1.024 | 1.094 | -3.453 | -0.472 |
| 10 | -2.407 | -3.415 | 1.338 | -2.723 |
| 11 | -1.008 | -1.338 | 0.889 | -0.062 |