Transcription factor | EGR1 | ||||||||
Model | EGR1_HUMAN.H10MO.S | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 11 | ||||||||
Quality | S | ||||||||
Consensus | nGCGKGGGYGK | ||||||||
wAUC | 0.8713162672214227 | ||||||||
Best AUC | 0.9515075561619886 | ||||||||
Benchmark datasets | 9 | ||||||||
Aligned words | 2104 | ||||||||
TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
TF subfamily | EGR factors{2.3.1.3} | ||||||||
HGNC | 3238 | ||||||||
EntrezGene | 1958 | ||||||||
UniProt ID | EGR1_HUMAN | ||||||||
UniProt AC | P18146 | ||||||||
Comment | Secondary motif. | ||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 285.897 | 355.779 | 600.935 | 644.414 |
02 | 83.035 | 113.692 | 1665.808 | 24.49 |
03 | 113.185 | 1562.986 | 35.147 | 175.707 |
04 | 6.829 | 1.868 | 1874.85 | 3.478 |
05 | 17.511 | 25.252 | 925.963 | 918.298 |
06 | 143.216 | 36.45 | 1702.385 | 4.974 |
07 | 48.106 | 124.169 | 1700.411 | 14.339 |
08 | 22.525 | 19.39 | 1845.11 | 0.0 |
09 | 168.149 | 1412.317 | 13.109 | 293.449 |
10 | 40.782 | 13.679 | 1803.338 | 29.226 |
11 | 170.947 | 122.404 | 1150.216 | 443.457 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.498 | -0.281 | 0.241 | 0.311 |
02 | -1.719 | -1.411 | 1.259 | -2.888 |
03 | -1.415 | 1.195 | -2.549 | -0.981 |
04 | -3.995 | -4.838 | 1.377 | -4.481 |
05 | -3.195 | -2.86 | 0.672 | 0.664 |
06 | -1.183 | -2.514 | 1.28 | -4.235 |
07 | -2.249 | -1.324 | 1.279 | -3.374 |
08 | -2.965 | -3.103 | 1.361 | -5.526 |
09 | -1.024 | 1.094 | -3.453 | -0.472 |
10 | -2.407 | -3.415 | 1.338 | -2.723 |
11 | -1.008 | -1.338 | 0.889 | -0.062 |