Transcription factor | DUXA | ||||||||
Model | DUXA_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | TGATTARvTYR | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 2685 | ||||||||
TF family | Paired-related HD factors{3.1.3} | ||||||||
TF subfamily | DUX{3.1.3.7} | ||||||||
HGNC | 32179 | ||||||||
EntrezGene | 503835 | ||||||||
UniProt ID | DUXA_HUMAN | ||||||||
UniProt AC | A6NLW8 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 67.75 | 53.75 | 48.75 | 2514.75 |
02 | 52.0 | 5.0 | 2620.0 | 8.0 |
03 | 2668.5 | 6.5 | 7.5 | 2.5 |
04 | 4.25 | 0.25 | 2.25 | 2678.25 |
05 | 3.0 | 13.0 | 15.0 | 2654.0 |
06 | 2315.0 | 14.0 | 355.0 | 1.0 |
07 | 1435.0 | 268.0 | 962.0 | 20.0 |
08 | 1408.5 | 280.5 | 834.5 | 161.5 |
09 | 35.25 | 4.25 | 43.25 | 2602.25 |
10 | 166.0 | 803.0 | 154.0 | 1562.0 |
11 | 1771.5 | 197.5 | 365.5 | 350.5 |
A | C | G | T | |
---|---|---|---|---|
01 | -2.268 | -2.492 | -2.586 | 1.319 |
02 | -2.524 | -4.57 | 1.36 | -4.212 |
03 | 1.378 | -4.375 | -4.264 | -5.014 |
04 | -4.684 | -5.713 | -5.071 | 1.382 |
05 | -4.908 | -3.806 | -3.68 | 1.372 |
06 | 1.236 | -3.741 | -0.634 | -5.422 |
07 | 0.758 | -0.914 | 0.359 | -3.422 |
08 | 0.74 | -0.868 | 0.217 | -1.415 |
09 | -2.895 | -4.684 | -2.7 | 1.353 |
10 | -1.388 | 0.179 | -1.462 | 0.843 |
11 | 0.969 | -1.216 | -0.605 | -0.647 |