Model info
| Transcription factor | CUX2 | ||||||||
| Model | CUX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 21 | ||||||||
| Quality | D | ||||||||
| Consensus | ddKhdWWdndddKATCGAThh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26542 | ||||||||
| TF family | HD-CUT factors{3.1.9} | ||||||||
| TF subfamily | CUX{3.1.9.2} | ||||||||
| HGNC | 19347 | ||||||||
| EntrezGene | 23316 | ||||||||
| UniProt ID | CUX2_HUMAN | ||||||||
| UniProt AC | O14529 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6548.5 | 3358.5 | 9857.5 | 6771.5 |
| 02 | 15590.5 | 2859.5 | 3409.5 | 4676.5 |
| 03 | 3284.5 | 3015.5 | 3840.5 | 16395.5 |
| 04 | 4920.75 | 14894.75 | 3343.75 | 3376.75 |
| 05 | 8764.25 | 2184.25 | 11391.25 | 4196.25 |
| 06 | 16412.25 | 2411.25 | 2703.25 | 5009.25 |
| 07 | 5623.25 | 2114.25 | 2457.25 | 16341.25 |
| 08 | 11905.25 | 2373.25 | 3422.25 | 8835.25 |
| 09 | 8106.5 | 5528.5 | 3684.5 | 9216.5 |
| 10 | 7915.0 | 3176.0 | 9072.0 | 6373.0 |
| 11 | 9121.0 | 3034.0 | 6466.0 | 7915.0 |
| 12 | 4299.0 | 1623.0 | 5702.0 | 14912.0 |
| 13 | 2627.25 | 873.25 | 3028.25 | 20007.25 |
| 14 | 26049.5 | 76.5 | 214.5 | 195.5 |
| 15 | 69.0 | 58.0 | 127.0 | 26282.0 |
| 16 | 73.75 | 20086.75 | 247.75 | 6127.75 |
| 17 | 109.5 | 35.5 | 26345.5 | 45.5 |
| 18 | 25785.0 | 131.0 | 471.0 | 149.0 |
| 19 | 242.75 | 199.75 | 191.75 | 25901.75 |
| 20 | 3399.0 | 8429.0 | 1302.0 | 13406.0 |
| 21 | 14869.25 | 4361.25 | 3067.25 | 4238.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.013 | -0.68 | 0.396 | 0.021 |
| 02 | 0.854 | -0.841 | -0.665 | -0.349 |
| 03 | -0.703 | -0.788 | -0.546 | 0.905 |
| 04 | -0.299 | 0.809 | -0.685 | -0.675 |
| 05 | 0.278 | -1.11 | 0.54 | -0.458 |
| 06 | 0.906 | -1.011 | -0.897 | -0.281 |
| 07 | -0.165 | -1.143 | -0.993 | 0.901 |
| 08 | 0.585 | -1.027 | -0.662 | 0.286 |
| 09 | 0.2 | -0.182 | -0.588 | 0.329 |
| 10 | 0.176 | -0.736 | 0.313 | -0.04 |
| 11 | 0.318 | -0.782 | -0.026 | 0.176 |
| 12 | -0.434 | -1.407 | -0.151 | 0.81 |
| 13 | -0.926 | -2.025 | -0.784 | 1.104 |
| 14 | 1.368 | -4.43 | -3.42 | -3.512 |
| 15 | -4.53 | -4.697 | -3.936 | 1.376 |
| 16 | -4.466 | 1.108 | -3.278 | -0.079 |
| 17 | -4.081 | -5.162 | 1.379 | -4.928 |
| 18 | 1.357 | -3.906 | -2.64 | -3.779 |
| 19 | -3.298 | -3.491 | -3.531 | 1.362 |
| 20 | -0.668 | 0.239 | -1.627 | 0.703 |
| 21 | 0.807 | -0.419 | -0.771 | -0.448 |