Transcription factor | CTCF | ||||||||
Model | CTCF_HUMAN.H10MO.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | ChIP-Seq | ||||||||
Model length | 20 | ||||||||
Quality | A | ||||||||
Consensus | bbdCCRShAGGKGGCRSbvb | ||||||||
wAUC | 0.9734995444180691 | ||||||||
Best AUC | 0.9938524963371513 | ||||||||
Benchmark datasets | 151 | ||||||||
Aligned words | 491 | ||||||||
TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
TF subfamily | CTCF-like factors{2.3.3.50} | ||||||||
HGNC | 13723 | ||||||||
EntrezGene | 10664 | ||||||||
UniProt ID | CTCF_HUMAN | ||||||||
UniProt AC | P49711 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 53.728 | 166.678 | 73.548 | 195.619 |
02 | 86.166 | 96.5 | 203.426 | 103.481 |
03 | 125.172 | 45.114 | 237.261 | 82.027 |
04 | 44.345 | 399.385 | 20.574 | 25.268 |
05 | 3.867 | 478.849 | 4.887 | 1.97 |
06 | 339.689 | 14.692 | 95.661 | 39.531 |
07 | 12.795 | 311.079 | 156.598 | 9.101 |
08 | 61.605 | 211.8 | 31.281 | 184.887 |
09 | 432.57 | 7.794 | 26.789 | 22.421 |
10 | 1.0 | 1.034 | 486.432 | 1.107 |
11 | 182.443 | 1.059 | 304.932 | 1.139 |
12 | 22.438 | 10.672 | 271.211 | 185.252 |
13 | 2.851 | 4.069 | 480.379 | 2.275 |
14 | 23.755 | 14.296 | 412.325 | 39.198 |
15 | 42.827 | 402.018 | 3.82 | 40.908 |
16 | 190.466 | 8.454 | 284.436 | 6.217 |
17 | 37.546 | 284.517 | 147.739 | 19.772 |
18 | 36.166 | 191.756 | 37.676 | 223.976 |
19 | 199.912 | 117.496 | 151.7 | 20.466 |
20 | 62.093 | 106.939 | 151.626 | 168.916 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.807 | 0.306 | -0.501 | 0.464 |
02 | -0.346 | -0.234 | 0.503 | -0.166 |
03 | 0.022 | -0.977 | 0.656 | -0.394 |
04 | -0.993 | 1.174 | -1.723 | -1.531 |
05 | -3.131 | 1.355 | -2.958 | -3.562 |
06 | 1.013 | -2.032 | -0.243 | -1.104 |
07 | -2.157 | 0.925 | 0.244 | -2.454 |
08 | -0.674 | 0.543 | -1.329 | 0.408 |
09 | 1.254 | -2.585 | -1.476 | -1.643 |
10 | -3.884 | -3.871 | 1.37 | -3.843 |
11 | 0.395 | -3.862 | 0.905 | -3.831 |
12 | -1.642 | -2.317 | 0.789 | 0.41 |
13 | -3.338 | -3.094 | 1.358 | -3.479 |
14 | -1.589 | -2.057 | 1.206 | -1.112 |
15 | -1.027 | 1.181 | -3.139 | -1.071 |
16 | 0.438 | -2.517 | 0.836 | -2.77 |
17 | -1.154 | 0.836 | 0.186 | -1.76 |
18 | -1.19 | 0.444 | -1.151 | 0.599 |
19 | 0.486 | -0.04 | 0.212 | -1.728 |
20 | -0.667 | -0.133 | 0.212 | 0.319 |