Model info
| Transcription factor | CTCF | ||||||||
| Model | CTCF_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Consensus | bbdCCRShAGGKGGCRSbvb | ||||||||
| wAUC | 0.9734995444180691 | ||||||||
| Best AUC | 0.9938524963371513 | ||||||||
| Benchmark datasets | 151 | ||||||||
| Aligned words | 491 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | CTCF-like factors{2.3.3.50} | ||||||||
| HGNC | 13723 | ||||||||
| EntrezGene | 10664 | ||||||||
| UniProt ID | CTCF_HUMAN | ||||||||
| UniProt AC | P49711 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 53.728 | 166.678 | 73.548 | 195.619 |
| 02 | 86.166 | 96.5 | 203.426 | 103.481 |
| 03 | 125.172 | 45.114 | 237.261 | 82.027 |
| 04 | 44.345 | 399.385 | 20.574 | 25.268 |
| 05 | 3.867 | 478.849 | 4.887 | 1.97 |
| 06 | 339.689 | 14.692 | 95.661 | 39.531 |
| 07 | 12.795 | 311.079 | 156.598 | 9.101 |
| 08 | 61.605 | 211.8 | 31.281 | 184.887 |
| 09 | 432.57 | 7.794 | 26.789 | 22.421 |
| 10 | 1.0 | 1.034 | 486.432 | 1.107 |
| 11 | 182.443 | 1.059 | 304.932 | 1.139 |
| 12 | 22.438 | 10.672 | 271.211 | 185.252 |
| 13 | 2.851 | 4.069 | 480.379 | 2.275 |
| 14 | 23.755 | 14.296 | 412.325 | 39.198 |
| 15 | 42.827 | 402.018 | 3.82 | 40.908 |
| 16 | 190.466 | 8.454 | 284.436 | 6.217 |
| 17 | 37.546 | 284.517 | 147.739 | 19.772 |
| 18 | 36.166 | 191.756 | 37.676 | 223.976 |
| 19 | 199.912 | 117.496 | 151.7 | 20.466 |
| 20 | 62.093 | 106.939 | 151.626 | 168.916 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.807 | 0.306 | -0.501 | 0.464 |
| 02 | -0.346 | -0.234 | 0.503 | -0.166 |
| 03 | 0.022 | -0.977 | 0.656 | -0.394 |
| 04 | -0.993 | 1.174 | -1.723 | -1.531 |
| 05 | -3.131 | 1.355 | -2.958 | -3.562 |
| 06 | 1.013 | -2.032 | -0.243 | -1.104 |
| 07 | -2.157 | 0.925 | 0.244 | -2.454 |
| 08 | -0.674 | 0.543 | -1.329 | 0.408 |
| 09 | 1.254 | -2.585 | -1.476 | -1.643 |
| 10 | -3.884 | -3.871 | 1.37 | -3.843 |
| 11 | 0.395 | -3.862 | 0.905 | -3.831 |
| 12 | -1.642 | -2.317 | 0.789 | 0.41 |
| 13 | -3.338 | -3.094 | 1.358 | -3.479 |
| 14 | -1.589 | -2.057 | 1.206 | -1.112 |
| 15 | -1.027 | 1.181 | -3.139 | -1.071 |
| 16 | 0.438 | -2.517 | 0.836 | -2.77 |
| 17 | -1.154 | 0.836 | 0.186 | -1.76 |
| 18 | -1.19 | 0.444 | -1.151 | 0.599 |
| 19 | 0.486 | -0.04 | 0.212 | -1.728 |
| 20 | -0.667 | -0.133 | 0.212 | 0.319 |