Model info
| Transcription factor | Crx | ||||||||
| Model | CRX_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Consensus | hdRdvRGATTAd | ||||||||
| wAUC | 0.8561267887670638 | ||||||||
| Best AUC | 0.8629600802653843 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | OTX{3.1.3.17} | ||||||||
| MGI | 1194883 | ||||||||
| EntrezGene | 12951 | ||||||||
| UniProt ID | CRX_MOUSE | ||||||||
| UniProt AC | O54751 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 162.169 | 67.753 | 44.693 | 225.385 |
| 02 | 257.982 | 49.528 | 136.198 | 56.291 |
| 03 | 310.664 | 44.169 | 88.811 | 56.356 |
| 04 | 102.418 | 39.558 | 247.867 | 110.158 |
| 05 | 197.699 | 78.852 | 155.73 | 67.719 |
| 06 | 167.592 | 4.025 | 324.55 | 3.833 |
| 07 | 1.828 | 13.393 | 484.78 | 0.0 |
| 08 | 408.674 | 86.542 | 3.811 | 0.973 |
| 09 | 0.0 | 0.0 | 0.0 | 500.0 |
| 10 | 7.394 | 8.409 | 2.183 | 482.014 |
| 11 | 449.175 | 0.0 | 2.829 | 47.996 |
| 12 | 213.592 | 39.175 | 196.124 | 51.11 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.258 | -0.602 | -1.007 | 0.584 |
| 02 | 0.718 | -0.907 | 0.085 | -0.783 |
| 03 | 0.903 | -1.018 | -0.337 | -0.782 |
| 04 | -0.197 | -1.124 | 0.678 | -0.125 |
| 05 | 0.454 | -0.454 | 0.217 | -0.603 |
| 06 | 0.29 | -3.122 | 0.947 | -3.157 |
| 07 | -3.622 | -2.136 | 1.346 | -4.4 |
| 08 | 1.176 | -0.362 | -3.161 | -3.914 |
| 09 | -4.4 | -4.4 | -4.4 | 1.377 |
| 10 | -2.649 | -2.542 | -3.522 | 1.341 |
| 11 | 1.27 | -4.4 | -3.363 | -0.938 |
| 12 | 0.531 | -1.134 | 0.446 | -0.877 |