CRX_MOUSE.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

Crx

Model

CRX_MOUSE.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

18

Quality

A

Consensus

nnnnhdvddRGATTAdnn

wAUC

0.862689719482612

Best AUC

0.8724564705431574

Benchmark datasets

2

Aligned words

500

TF family

Paired-related HD factors{3.1.3}

TF subfamily

OTX{3.1.3.17}

MGI

1194883

EntrezGene

12951

UniProt ID

CRX_MOUSE

UniProt AC

O54751

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	7.7521
0.0005	10.1291
0.0001	14.4591

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	43.858	7.883	61.722	32.118	28.961	10.913	1.743	42.519	57.176	23.88	39.701	15.126	37.088	27.863	30.969	38.479
02	34.795	34.576	45.727	51.985	16.57	8.987	0.0	44.982	40.281	36.309	44.659	12.887	24.9	25.623	30.168	47.55
03	26.278	25.349	35.603	29.317	25.157	19.288	2.943	58.107	29.279	52.776	17.437	21.063	31.777	36.33	23.591	65.706
04	46.482	4.055	20.242	41.712	36.063	21.427	0.925	75.329	21.783	14.376	15.146	28.269	51.288	29.56	25.204	68.14
05	76.301	12.792	46.632	19.891	37.141	9.211	1.825	21.24	16.029	9.428	27.062	8.998	91.857	20.021	63.286	38.285
06	146.516	6.775	57.414	10.623	33.486	5.088	1.77	11.108	56.517	27.971	36.85	17.468	36.311	19.221	20.485	12.398
07	44.591	15.349	140.933	71.957	26.213	2.943	1.876	28.023	48.115	14.666	37.254	16.485	7.804	9.81	28.339	5.643
08	39.702	8.721	66.145	12.155	20.28	6.151	2.967	13.369	80.189	40.75	59.556	27.907	33.299	15.792	54.943	18.073
09	32.971	0.0	139.421	1.078	38.9	4.02	23.779	4.715	55.786	3.72	115.124	8.98	16.934	0.848	52.847	0.876
10	0.0	0.0	144.591	0.0	0.0	1.75	6.838	0.0	8.909	15.871	306.391	0.0	0.0	0.0	15.65	0.0
11	6.944	1.965	0.0	0.0	16.735	0.885	0.0	0.0	396.266	74.475	1.758	0.973	0.0	0.0	0.0	0.0
12	0.0	0.0	0.0	419.945	0.0	0.0	0.0	77.324	0.0	0.0	0.0	1.758	0.0	0.0	0.0	0.973
13	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.872	3.106	0.0	495.021
14	1.872	0.0	0.0	0.0	3.106	0.0	0.0	0.0	0.0	0.0	0.0	0.0	479.684	0.0	3.737	11.6
15	221.815	31.23	171.858	59.76	0.0	0.0	0.0	0.0	0.0	1.898	0.0	1.838	2.96	2.092	6.548	0.0
16	77.573	50.754	73.907	22.541	18.775	9.993	0.0	6.453	37.739	52.507	58.107	30.052	9.049	20.188	27.182	5.178
17	30.027	18.213	70.415	24.482	26.056	52.432	2.961	51.993	35.41	42.579	43.849	37.359	13.223	15.664	21.442	13.895

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.335	-1.342	0.675	0.027	-0.075	-1.029	-2.697	0.305	0.599	-0.265	0.237	-0.713	0.169	-0.113	-0.009	0.206
02	0.106	0.1	0.377	0.504	-0.624	-1.216	-4.4	0.36	0.251	0.148	0.353	-0.868	-0.224	-0.196	-0.035	0.416
03	-0.171	-0.206	0.129	-0.063	-0.214	-0.475	-2.251	0.615	-0.064	0.519	-0.574	-0.389	0.017	0.149	-0.277	0.737
04	0.393	-1.963	-0.428	0.286	0.142	-0.372	-3.182	0.873	-0.356	-0.762	-0.711	-0.099	0.491	-0.055	-0.212	0.773
05	0.885	-0.876	0.396	-0.445	0.171	-1.193	-2.66	-0.38	-0.656	-1.17	-0.142	-1.215	1.07	-0.438	0.699	0.201
06	1.535	-1.485	0.603	-1.055	0.068	-1.754	-2.685	-1.012	0.587	-0.109	0.163	-0.572	0.148	-0.478	-0.416	-0.906
07	0.352	-0.698	1.497	0.827	-0.173	-2.251	-2.637	-0.108	0.427	-0.743	0.174	-0.629	-1.351	-1.132	-0.097	-1.657
08	0.237	-1.245	0.743	-0.925	-0.426	-1.576	-2.244	-0.833	0.935	0.263	0.639	-0.112	0.063	-0.671	0.559	-0.539
09	0.053	-4.4	1.486	-3.071	0.217	-1.971	-0.269	-1.824	0.574	-2.041	1.295	-1.217	-0.602	-3.242	0.52	-3.22
10	-4.4	-4.4	1.522	-4.4	-4.4	-2.694	-1.477	-4.4	-1.225	-0.666	2.272	-4.4	-4.4	-4.4	-0.679	-4.4
11	-1.462	-2.599	-4.4	-4.4	-0.614	-3.213	-4.4	-4.4	2.529	0.861	-2.691	-3.146	-4.4	-4.4	-4.4	-4.4
12	-4.4	-4.4	-4.4	2.587	-4.4	-4.4	-4.4	0.899	-4.4	-4.4	-4.4	-2.691	-4.4	-4.4	-4.4	-3.146
13	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-2.639	-2.203	-4.4	2.751
14	-2.639	-4.4	-4.4	-4.4	-2.203	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	2.72	-4.4	-2.037	-0.97
15	1.949	-0.001	1.695	0.642	-4.4	-4.4	-4.4	-4.4	-4.4	-2.627	-4.4	-2.654	-2.246	-2.546	-1.518	-4.4
16	0.902	0.48	0.854	-0.322	-0.501	-1.114	-4.4	-1.531	0.187	0.514	0.615	-0.039	-1.21	-0.43	-0.138	-1.738
17	-0.039	-0.531	0.806	-0.241	-0.179	0.513	-2.246	0.504	0.124	0.306	0.335	0.177	-0.843	-0.678	-0.371	-0.795