Model info
| Transcription factor | CRX | ||||||||
| Model | CRX_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Consensus | vdGATTAd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 53 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | OTX{3.1.3.17} | ||||||||
| HGNC | 2383 | ||||||||
| EntrezGene | 1406 | ||||||||
| UniProt ID | CRX_HUMAN | ||||||||
| UniProt AC | O43186 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 12.84 | 13.053 | 20.725 | 5.381 |
| 02 | 14.172 | 0.959 | 24.721 | 12.148 |
| 03 | 6.074 | 1.066 | 43.795 | 1.066 |
| 04 | 38.574 | 11.295 | 0.0 | 2.131 |
| 05 | 2.131 | 0.0 | 0.0 | 49.869 |
| 06 | 2.131 | 1.066 | 0.0 | 48.803 |
| 07 | 49.869 | 1.066 | 1.066 | 0.0 |
| 08 | 20.379 | 2.797 | 22.83 | 5.994 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.011 | 0.004 | 0.44 | -0.787 |
| 02 | 0.08 | -1.972 | 0.609 | -0.063 |
| 03 | -0.684 | -1.919 | 1.164 | -1.919 |
| 04 | 1.04 | -0.13 | -2.65 | -1.501 |
| 05 | -1.501 | -2.65 | -2.65 | 1.291 |
| 06 | -1.501 | -1.919 | -2.65 | 1.27 |
| 07 | 1.291 | -1.919 | -1.919 | -2.65 |
| 08 | 0.424 | -1.307 | 0.532 | -0.695 |