Model info
| Transcription factor | CPEB1 | ||||||||
| Model | CPEB1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | hTTTTATYhYYYYWWWh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 1803 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | 21744 | ||||||||
| EntrezGene | 64506 | ||||||||
| UniProt ID | CPEB1_HUMAN | ||||||||
| UniProt AC | Q9BZB8 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 295.0 | 393.0 | 161.0 | 954.0 |
| 02 | 1.0 | 1.0 | 1.0 | 1800.0 |
| 03 | 8.5 | 6.5 | 0.5 | 1787.5 |
| 04 | 1.25 | 3.25 | 0.25 | 1798.25 |
| 05 | 0.0 | 3.0 | 0.0 | 1800.0 |
| 06 | 1797.0 | 1.0 | 4.0 | 1.0 |
| 07 | 4.0 | 98.0 | 6.0 | 1695.0 |
| 08 | 231.0 | 425.0 | 51.0 | 1096.0 |
| 09 | 328.0 | 452.0 | 132.0 | 891.0 |
| 10 | 167.0 | 403.0 | 87.0 | 1146.0 |
| 11 | 146.0 | 332.0 | 62.0 | 1263.0 |
| 12 | 118.0 | 245.0 | 47.0 | 1393.0 |
| 13 | 181.0 | 213.0 | 29.0 | 1380.0 |
| 14 | 326.75 | 178.75 | 20.75 | 1276.75 |
| 15 | 404.0 | 210.0 | 42.0 | 1147.0 |
| 16 | 433.25 | 304.25 | 62.25 | 1003.25 |
| 17 | 403.25 | 379.25 | 126.25 | 894.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.422 | -0.136 | -1.022 | 0.748 |
| 02 | -5.059 | -5.059 | -5.059 | 1.382 |
| 03 | -3.776 | -3.99 | -5.25 | 1.375 |
| 04 | -4.976 | -4.481 | -5.362 | 1.381 |
| 05 | -5.487 | -4.531 | -5.487 | 1.382 |
| 06 | 1.38 | -5.059 | -4.344 | -5.059 |
| 07 | -4.344 | -1.511 | -4.051 | 1.321 |
| 08 | -0.665 | -0.059 | -2.147 | 0.886 |
| 09 | -0.316 | 0.003 | -1.218 | 0.679 |
| 10 | -0.986 | -0.111 | -1.628 | 0.931 |
| 11 | -1.119 | -0.304 | -1.958 | 1.028 |
| 12 | -1.329 | -0.606 | -2.226 | 1.125 |
| 13 | -0.906 | -0.745 | -2.685 | 1.116 |
| 14 | -0.32 | -0.919 | -2.996 | 1.038 |
| 15 | -0.109 | -0.759 | -2.334 | 0.931 |
| 16 | -0.039 | -0.391 | -1.954 | 0.798 |
| 17 | -0.111 | -0.172 | -1.262 | 0.683 |