Model info
| Transcription factor | NR2F2 | ||||||||
| Model | COT2_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Consensus | vMRAGGTCAdvdd | ||||||||
| wAUC | 0.7987986453220803 | ||||||||
| Best AUC | 0.8505318045160639 | ||||||||
| Benchmark datasets | 5 | ||||||||
| Aligned words | 509 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F){2.1.3.5} | ||||||||
| HGNC | 7976 | ||||||||
| EntrezGene | 7026 | ||||||||
| UniProt ID | COT2_HUMAN | ||||||||
| UniProt AC | P24468 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 94.404 | 235.183 | 92.717 | 77.697 |
| 02 | 333.398 | 74.61 | 42.53 | 49.462 |
| 03 | 265.6 | 37.139 | 171.971 | 25.29 |
| 04 | 366.427 | 1.046 | 129.584 | 2.943 |
| 05 | 3.755 | 0.0 | 490.6 | 5.645 |
| 06 | 17.737 | 3.713 | 451.872 | 26.678 |
| 07 | 3.755 | 25.059 | 40.867 | 430.319 |
| 08 | 0.91 | 462.9 | 10.866 | 25.325 |
| 09 | 494.228 | 0.0 | 3.971 | 1.801 |
| 10 | 186.793 | 60.47 | 188.791 | 63.946 |
| 11 | 204.469 | 58.312 | 191.673 | 45.545 |
| 12 | 106.411 | 28.736 | 282.432 | 82.421 |
| 13 | 116.286 | 63.682 | 189.97 | 130.062 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.277 | 0.626 | -0.294 | -0.468 |
| 02 | 0.973 | -0.508 | -1.055 | -0.909 |
| 03 | 0.747 | -1.185 | 0.316 | -1.551 |
| 04 | 1.067 | -3.885 | 0.036 | -3.337 |
| 05 | -3.171 | -4.4 | 1.358 | -2.867 |
| 06 | -1.881 | -3.179 | 1.276 | -1.5 |
| 07 | -3.171 | -1.559 | -1.093 | 1.227 |
| 08 | -3.939 | 1.3 | -2.321 | -1.549 |
| 09 | 1.365 | -4.4 | -3.131 | -3.63 |
| 10 | 0.398 | -0.713 | 0.408 | -0.659 |
| 11 | 0.487 | -0.749 | 0.423 | -0.988 |
| 12 | -0.159 | -1.43 | 0.808 | -0.41 |
| 13 | -0.071 | -0.663 | 0.414 | 0.039 |