Model info
| Transcription factor | Ebf1 | ||||||||
| Model | COE1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | bYCCCWKGGGRvh | ||||||||
| wAUC | 0.9285894408954788 | ||||||||
| Best AUC | 0.9285894408954788 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | Early B-Cell Factor-related factors{6.1.5} | ||||||||
| TF subfamily | EBF1 (COE1){6.1.5.0.1} | ||||||||
| MGI | 95275 | ||||||||
| EntrezGene | 13591 | ||||||||
| UniProt ID | COE1_MOUSE | ||||||||
| UniProt AC | Q07802 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 33.957 | 130.498 | 238.71 | 96.835 |
| 02 | 22.991 | 115.183 | 12.024 | 349.802 |
| 03 | 0.0 | 497.28 | 2.72 | 0.0 |
| 04 | 7.148 | 395.028 | 0.0 | 97.824 |
| 05 | 1.116 | 494.176 | 0.921 | 3.787 |
| 06 | 180.114 | 4.038 | 13.607 | 302.24 |
| 07 | 35.902 | 7.386 | 355.942 | 100.771 |
| 08 | 7.194 | 1.782 | 489.429 | 1.594 |
| 09 | 83.485 | 0.0 | 416.515 | 0.0 |
| 10 | 0.851 | 0.0 | 499.149 | 0.0 |
| 11 | 369.81 | 19.431 | 103.259 | 7.5 |
| 12 | 104.606 | 190.499 | 130.818 | 74.077 |
| 13 | 97.644 | 168.172 | 49.204 | 184.979 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.271 | 0.043 | 0.641 | -0.252 |
| 02 | -1.64 | -0.081 | -2.232 | 1.021 |
| 03 | -4.4 | 1.372 | -3.388 | -4.4 |
| 04 | -2.677 | 1.142 | -4.4 | -0.242 |
| 05 | -3.859 | 1.365 | -3.934 | -3.165 |
| 06 | 0.362 | -3.119 | -2.122 | 0.876 |
| 07 | -1.218 | -2.65 | 1.038 | -0.213 |
| 08 | -2.672 | -3.636 | 1.356 | -3.694 |
| 09 | -0.398 | -4.4 | 1.195 | -4.4 |
| 10 | -3.963 | -4.4 | 1.375 | -4.4 |
| 11 | 1.077 | -1.797 | -0.188 | -2.638 |
| 12 | -0.176 | 0.417 | 0.045 | -0.515 |
| 13 | -0.244 | 0.294 | -0.914 | 0.388 |