Model info
| Transcription factor | EBF1 | ||||||||
| Model | COE1_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Consensus | dddYCCCWRGGGAvh | ||||||||
| wAUC | 0.8584961890386427 | ||||||||
| Best AUC | 0.9228442674347253 | ||||||||
| Benchmark datasets | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Early B-Cell Factor-related factors{6.1.5} | ||||||||
| TF subfamily | EBF1 (COE1){6.1.5.0.1} | ||||||||
| HGNC | 3126 | ||||||||
| EntrezGene | 1879 | ||||||||
| UniProt ID | COE1_HUMAN | ||||||||
| UniProt AC | Q9UH73 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 203.904 | 75.334 | 104.271 | 116.49 |
| 02 | 230.063 | 45.186 | 153.68 | 71.07 |
| 03 | 90.757 | 84.202 | 208.311 | 116.731 |
| 04 | 12.76 | 180.207 | 33.53 | 273.503 |
| 05 | 0.96 | 498.128 | 0.0 | 0.912 |
| 06 | 1.972 | 373.507 | 0.0 | 124.52 |
| 07 | 4.157 | 487.749 | 0.0 | 8.095 |
| 08 | 247.702 | 3.06 | 17.543 | 231.696 |
| 09 | 90.599 | 9.293 | 327.691 | 72.417 |
| 10 | 15.29 | 1.014 | 483.696 | 0.0 |
| 11 | 65.471 | 0.0 | 428.433 | 6.096 |
| 12 | 0.0 | 1.025 | 496.915 | 2.06 |
| 13 | 399.592 | 12.213 | 73.91 | 14.285 |
| 14 | 107.607 | 205.109 | 162.583 | 24.701 |
| 15 | 134.246 | 133.854 | 48.297 | 183.602 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.485 | -0.498 | -0.179 | -0.07 |
| 02 | 0.604 | -0.996 | 0.204 | -0.555 |
| 03 | -0.316 | -0.389 | 0.506 | -0.068 |
| 04 | -2.179 | 0.362 | -1.283 | 0.776 |
| 05 | -3.919 | 1.373 | -4.4 | -3.938 |
| 06 | -3.58 | 1.086 | -4.4 | -0.004 |
| 07 | -3.098 | 1.352 | -4.4 | -2.574 |
| 08 | 0.678 | -3.312 | -1.891 | 0.611 |
| 09 | -0.317 | -2.457 | 0.956 | -0.537 |
| 10 | -2.017 | -3.898 | 1.344 | -4.4 |
| 11 | -0.636 | -4.4 | 1.223 | -2.806 |
| 12 | -4.4 | -3.894 | 1.371 | -3.556 |
| 13 | 1.154 | -2.218 | -0.517 | -2.078 |
| 14 | -0.148 | 0.49 | 0.26 | -1.573 |
| 15 | 0.071 | 0.068 | -0.932 | 0.381 |