Model info
| Transcription factor | CLOCK | ||||||||
| Model | CLOCK_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 20 | ||||||||
| Quality | D | ||||||||
| Consensus | vSnnGSRWRvvRSGGGTnnn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 9 | ||||||||
| TF family | PAS domain factors{1.2.5} | ||||||||
| TF subfamily | Arnt-like factors{1.2.5.2} | ||||||||
| HGNC | 2082 | ||||||||
| EntrezGene | 9575 | ||||||||
| UniProt ID | CLOCK_HUMAN | ||||||||
| UniProt AC | O15516 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.5 | 1.5 | 5.5 | 0.5 |
| 02 | 0.5 | 2.5 | 5.5 | 0.5 |
| 03 | 3.25 | 0.25 | 2.25 | 3.25 |
| 04 | 1.0 | 2.0 | 3.0 | 3.0 |
| 05 | 0.0 | 0.0 | 6.0 | 3.0 |
| 06 | 1.0 | 2.0 | 5.0 | 1.0 |
| 07 | 2.0 | 0.0 | 6.0 | 1.0 |
| 08 | 3.0 | 0.0 | 2.0 | 4.0 |
| 09 | 2.0 | 0.0 | 6.0 | 1.0 |
| 10 | 4.0 | 1.0 | 4.0 | 0.0 |
| 11 | 1.0 | 4.0 | 4.0 | 0.0 |
| 12 | 3.0 | 0.0 | 5.0 | 1.0 |
| 13 | 0.0 | 6.0 | 2.0 | 1.0 |
| 14 | 1.0 | 0.0 | 8.0 | 0.0 |
| 15 | 0.0 | 0.0 | 6.0 | 3.0 |
| 16 | 0.0 | 0.0 | 9.0 | 0.0 |
| 17 | 0.25 | 0.25 | 1.25 | 7.25 |
| 18 | 4.0 | 1.0 | 3.0 | 1.0 |
| 19 | 1.5 | 1.5 | 4.5 | 1.5 |
| 20 | 1.5 | 1.5 | 3.5 | 2.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.312 | -0.312 | 0.771 | -0.981 |
| 02 | -0.981 | 0.086 | 0.771 | -0.981 |
| 03 | 0.305 | -1.253 | 0.0 | 0.305 |
| 04 | -0.592 | -0.094 | 0.237 | 0.237 |
| 05 | -1.628 | -1.628 | 0.85 | 0.237 |
| 06 | -0.592 | -0.094 | 0.684 | -0.592 |
| 07 | -0.094 | -1.628 | 0.85 | -0.592 |
| 08 | 0.237 | -1.628 | -0.094 | 0.486 |
| 09 | -0.094 | -1.628 | 0.85 | -0.592 |
| 10 | 0.486 | -0.592 | 0.486 | -1.628 |
| 11 | -0.592 | 0.486 | 0.486 | -1.628 |
| 12 | 0.237 | -1.628 | 0.684 | -0.592 |
| 13 | -1.628 | 0.85 | -0.094 | -0.592 |
| 14 | -0.592 | -1.628 | 1.116 | -1.628 |
| 15 | -1.628 | -1.628 | 0.85 | 0.237 |
| 16 | -1.628 | -1.628 | 1.227 | -1.628 |
| 17 | -1.253 | -1.253 | -0.442 | 1.025 |
| 18 | 0.486 | -0.592 | 0.237 | -0.592 |
| 19 | -0.312 | -0.312 | 0.59 | -0.312 |
| 20 | -0.312 | -0.312 | 0.369 | 0.086 |