Model info
| Transcription factor | CENPB | ||||||||
| Model | CENPB_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | TTCGYWvnAhRCGGRdh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2219 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | 1852 | ||||||||
| EntrezGene | 1059 | ||||||||
| UniProt ID | CENPB_HUMAN | ||||||||
| UniProt AC | P07199 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 106.5 | 90.5 | 97.5 | 1924.5 |
| 02 | 306.75 | 27.75 | 45.75 | 1838.75 |
| 03 | 26.75 | 2115.75 | 26.75 | 49.75 |
| 04 | 1.0 | 0.0 | 2213.0 | 5.0 |
| 05 | 105.0 | 631.0 | 48.0 | 1435.0 |
| 06 | 960.0 | 204.0 | 106.0 | 949.0 |
| 07 | 397.0 | 795.0 | 732.0 | 295.0 |
| 08 | 357.0 | 492.0 | 747.0 | 623.0 |
| 09 | 2198.0 | 0.0 | 9.0 | 12.0 |
| 10 | 645.0 | 612.0 | 110.0 | 852.0 |
| 11 | 486.0 | 251.0 | 1482.0 | 0.0 |
| 12 | 13.0 | 2186.0 | 20.0 | 0.0 |
| 13 | 0.0 | 1.0 | 2218.0 | 0.0 |
| 14 | 17.5 | 3.5 | 2193.5 | 4.5 |
| 15 | 165.0 | 119.0 | 1784.0 | 151.0 |
| 16 | 750.75 | 262.75 | 288.75 | 916.75 |
| 17 | 661.75 | 394.75 | 331.75 | 830.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.636 | -1.796 | -1.723 | 1.241 |
| 02 | -0.59 | -2.932 | -2.458 | 1.196 |
| 03 | -2.966 | 1.336 | -2.966 | -2.377 |
| 04 | -5.248 | -5.666 | 1.381 | -4.387 |
| 05 | -1.65 | 0.128 | -2.411 | 0.948 |
| 06 | 0.547 | -0.994 | -1.641 | 0.535 |
| 07 | -0.333 | 0.359 | 0.276 | -0.629 |
| 08 | -0.439 | -0.12 | 0.297 | 0.116 |
| 09 | 1.374 | -5.666 | -3.931 | -3.688 |
| 10 | 0.15 | 0.098 | -1.604 | 0.428 |
| 11 | -0.132 | -0.789 | 0.98 | -5.666 |
| 12 | -3.619 | 1.369 | -3.234 | -5.666 |
| 13 | -5.666 | -5.248 | 1.383 | -5.666 |
| 14 | -3.355 | -4.631 | 1.372 | -4.462 |
| 15 | -1.204 | -1.527 | 1.166 | -1.292 |
| 16 | 0.302 | -0.743 | -0.65 | 0.501 |
| 17 | 0.176 | -0.339 | -0.512 | 0.403 |