Model info
| Transcription factor | Cdx4 | ||||||||
| Model | CDX4_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Consensus | WRATTTAYdRbh | ||||||||
| wAUC | 0.8513936928849216 | ||||||||
| Best AUC | 0.8700411514211168 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | CDX (Caudal type homeobox){3.1.1.9} | ||||||||
| MGI | 88362 | ||||||||
| EntrezGene | 12592 | ||||||||
| UniProt ID | CDX4_MOUSE | ||||||||
| UniProt AC | Q07424 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 161.092 | 9.18 | 47.818 | 281.911 |
| 02 | 87.27 | 11.767 | 325.893 | 75.071 |
| 03 | 399.06 | 18.976 | 3.864 | 78.099 |
| 04 | 5.457 | 4.964 | 1.999 | 487.579 |
| 05 | 7.85 | 3.018 | 5.718 | 483.413 |
| 06 | 19.314 | 26.285 | 21.735 | 432.665 |
| 07 | 498.141 | 0.966 | 0.894 | 0.0 |
| 08 | 14.173 | 96.952 | 11.136 | 377.739 |
| 09 | 85.105 | 12.568 | 242.436 | 159.891 |
| 10 | 84.158 | 20.651 | 332.139 | 63.052 |
| 11 | 31.415 | 283.454 | 107.956 | 77.176 |
| 12 | 109.219 | 199.699 | 44.344 | 146.739 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.251 | -2.467 | -0.941 | 0.806 |
| 02 | -0.354 | -2.251 | 0.951 | -0.502 |
| 03 | 1.152 | -1.819 | -3.151 | -0.463 |
| 04 | -2.893 | -2.966 | -3.573 | 1.352 |
| 05 | -2.6 | -3.321 | -2.857 | 1.343 |
| 06 | -1.802 | -1.514 | -1.693 | 1.233 |
| 07 | 1.373 | -3.917 | -3.946 | -4.4 |
| 08 | -2.085 | -0.251 | -2.3 | 1.098 |
| 09 | -0.379 | -2.193 | 0.656 | 0.243 |
| 10 | -0.39 | -1.74 | 0.97 | -0.672 |
| 11 | -1.345 | 0.812 | -0.145 | -0.475 |
| 12 | -0.133 | 0.464 | -1.014 | 0.159 |