CDX4_MOUSE.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

Cdx4

Model

CDX4_MOUSE.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

14

Quality

A

Consensus

nWRATTTAYKRbhn

wAUC

0.8556649397174473

Best AUC

0.8716569321731612

Benchmark datasets

2

Aligned words

513

TF family

HOX-related factors{3.1.1}

TF subfamily

CDX (Caudal type homeobox){3.1.1.9}

MGI

88362

EntrezGene

12592

UniProt ID

CDX4_MOUSE

UniProt AC

Q07424

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	8.0661
0.0005	10.1481
0.0001	14.3321

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	49.713	2.107	17.637	72.553	57.331	0.894	1.834	58.488	35.926	5.022	9.949	89.656	15.776	2.828	18.396	61.89
02	27.146	9.794	93.426	28.379	6.831	0.974	3.045	0.0	4.316	4.956	35.768	2.776	48.963	3.193	180.701	49.73
03	70.641	2.445	0.0	14.171	10.894	0.948	0.0	7.076	251.017	7.632	1.873	52.419	64.074	4.149	0.0	12.662
04	6.195	0.0	2.95	387.481	0.0	0.938	0.0	14.235	0.0	0.902	0.0	0.971	0.0	0.0	0.0	86.328
05	0.966	0.0	0.0	5.229	0.0	0.0	0.0	1.84	0.951	0.0	0.0	1.999	7.589	1.053	6.71	473.663
06	0.0	0.933	0.0	8.573	0.0	0.0	0.0	1.053	0.894	0.0	2.83	2.986	13.348	21.106	15.07	433.206
07	14.242	0.0	0.0	0.0	22.039	0.0	0.0	0.0	17.9	0.0	0.0	0.0	445.818	0.0	0.0	0.0
08	18.953	104.125	3.953	372.969	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
09	1.033	0.0	11.867	6.053	36.644	1.867	26.627	38.986	1.054	0.0	0.941	1.958	43.426	4.686	209.241	115.616
10	14.045	2.974	58.802	6.335	3.792	0.908	0.926	0.928	41.786	16.044	152.604	38.243	29.185	3.997	110.216	19.215
11	2.009	44.18	25.02	17.599	2.996	13.02	1.075	6.832	25.428	197.281	55.843	43.998	2.223	24.887	25.041	12.569
12	9.294	7.925	9.452	5.985	63.782	105.217	4.007	106.361	27.541	51.819	14.881	12.74	9.72	27.003	22.214	22.061
13	25.014	25.849	42.144	17.329	58.662	52.552	14.025	66.724	2.874	17.744	18.57	11.367	14.987	44.704	43.245	44.21

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.46	-2.54	-0.563	0.835	0.601	-3.206	-2.656	0.621	0.138	-1.766	-1.119	1.046	-0.672	-2.286	-0.521	0.677
02	-0.139	-1.134	1.087	-0.095	-1.478	-3.145	-2.221	-4.4	-1.906	-1.778	0.133	-2.303	0.445	-2.179	1.745	0.46
03	0.809	-2.413	-4.4	-0.776	-1.031	-3.165	-4.4	-1.444	2.073	-1.372	-2.638	0.512	0.712	-1.942	-4.4	-0.886
04	-1.57	-4.4	-2.249	2.506	-4.4	-3.172	-4.4	-0.772	-4.4	-3.2	-4.4	-3.147	-4.4	-4.4	-4.4	1.008
05	-3.151	-4.4	-4.4	-1.728	-4.4	-4.4	-4.4	-2.653	-3.162	-4.4	-4.4	-2.584	-1.378	-3.089	-1.494	2.707
06	-4.4	-3.176	-4.4	-1.261	-4.4	-4.4	-4.4	-3.089	-3.206	-4.4	-2.286	-2.238	-0.834	-0.387	-0.716	2.618
07	-0.771	-4.4	-4.4	-4.4	-0.344	-4.4	-4.4	-4.4	-0.548	-4.4	-4.4	-4.4	2.646	-4.4	-4.4	-4.4
08	-0.492	1.195	-1.986	2.468	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4
09	-3.103	-4.4	-0.948	-1.592	0.157	-2.641	-0.158	0.219	-3.088	-4.4	-3.169	-2.601	0.326	-1.83	1.891	1.299
10	-0.785	-2.242	0.626	-1.549	-2.024	-3.195	-3.181	-3.18	0.287	-0.655	1.576	0.2	-0.068	-1.976	1.252	-0.479
11	-2.58	0.343	-0.219	-0.565	-2.235	-0.859	-3.074	-1.477	-0.203	1.832	0.575	0.339	-2.495	-0.225	-0.218	-0.893
12	-1.184	-1.337	-1.168	-1.602	0.707	1.205	-1.974	1.216	-0.125	0.501	-0.729	-0.88	-1.141	-0.144	-0.336	-0.343
13	-0.22	-0.187	0.296	-0.58	0.624	0.515	-0.786	0.752	-2.272	-0.557	-0.512	-0.99	-0.722	0.354	0.321	0.343