Model info
Transcription factorCDX2
ModelCDX2_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length8
Quality
C
ConsensusWTTTAYdd
wAUC
Best AUC
Benchmark datasets
Aligned words36
TF familyHOX-related factors{3.1.1}
TF subfamilyCDX (Caudal type homeobox){3.1.1.9}
HGNC1806
EntrezGene1045
UniProt IDCDX2_HUMAN
UniProt ACQ99626
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0703
0.0005 5.873
0.0001 7.0448
PCM
ACGT
0117.2931.0242.50315.132
022.1620.00.033.79
030.00.01.02434.928
043.0720.00.032.88
0534.9280.01.0240.0
060.010.9222.27522.754
0712.8560.9115.4736.713
0810.7512.10515.3027.793
PWM
ACGT
010.61-1.639-1.0680.483
02-1.173-2.401-2.4011.255
03-2.401-2.401-1.6391.288
04-0.913-2.401-2.4011.229
051.288-2.401-1.639-2.401
06-2.4010.179-1.1370.872
070.33-1.70.504-0.262
080.164-1.1920.494-0.129