Model info
| Transcription factor | BSX | ||||||||
| Model | BSH_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Consensus | hvRTTAdvbvvWWW | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 8218 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | BSX{3.1.2.3} | ||||||||
| HGNC | 20450 | ||||||||
| EntrezGene | 390259 | ||||||||
| UniProt ID | BSH_HUMAN | ||||||||
| UniProt AC | Q3C1V8 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 917.0 | 3919.0 | 698.0 | 2679.0 |
| 02 | 3373.25 | 2194.25 | 1877.25 | 768.25 |
| 03 | 6606.0 | 535.0 | 637.0 | 435.0 |
| 04 | 4.0 | 4.0 | 4.0 | 8201.0 |
| 05 | 1.0 | 16.0 | 0.0 | 8196.0 |
| 06 | 8196.0 | 0.0 | 11.0 | 6.0 |
| 07 | 3952.25 | 981.25 | 1305.25 | 1974.25 |
| 08 | 1073.25 | 4527.25 | 1888.25 | 724.25 |
| 09 | 1134.5 | 2079.5 | 1722.5 | 3276.5 |
| 10 | 2516.75 | 3012.75 | 1463.75 | 1219.75 |
| 11 | 4139.0 | 1553.0 | 1538.0 | 983.0 |
| 12 | 1296.25 | 751.25 | 509.25 | 5656.25 |
| 13 | 1357.75 | 919.75 | 520.75 | 5414.75 |
| 14 | 5028.75 | 633.75 | 755.75 | 1794.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.805 | 0.646 | -1.077 | 0.266 |
| 02 | 0.496 | 0.066 | -0.09 | -0.981 |
| 03 | 1.168 | -1.342 | -1.168 | -1.548 |
| 04 | -5.795 | -5.795 | -5.795 | 1.384 |
| 05 | -6.449 | -4.724 | -6.816 | 1.383 |
| 06 | 1.383 | -6.816 | -5.044 | -5.518 |
| 07 | 0.654 | -0.737 | -0.452 | -0.039 |
| 08 | -0.648 | 0.79 | -0.084 | -1.04 |
| 09 | -0.592 | 0.013 | -0.175 | 0.467 |
| 10 | 0.203 | 0.383 | -0.338 | -0.52 |
| 11 | 0.7 | -0.279 | -0.289 | -0.735 |
| 12 | -0.459 | -1.004 | -1.391 | 1.013 |
| 13 | -0.413 | -0.802 | -1.369 | 0.969 |
| 14 | 0.895 | -1.173 | -0.998 | -0.134 |