Model info
Transcription factorT
ModelBRAC_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length25
Quality
D
ConsensusvSAWARTSACACCTAGGTGTSAAAW
wAUC
Best AUC
Benchmark datasets
Aligned words26
TF familyBrachyury-related factors{6.5.1}
TF subfamilyT (Brachyury){6.5.1.0.1}
MGI98472
EntrezGene20997
UniProt IDBRAC_MOUSE
UniProt ACP20293
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -1.1889
0.0005 0.2231
0.0001 3.2301
PCM
ACGT
0112.752.758.751.75
024.013.08.01.0
0321.01.01.03.0
049.01.01.015.0
0515.00.00.011.0
068.00.017.01.0
070.00.00.026.0
083.05.018.00.0
0926.00.00.00.0
100.026.00.00.0
1126.00.00.00.0
120.025.00.01.0
130.024.01.01.0
140.00.00.026.0
1526.00.00.00.0
160.02.024.00.0
170.01.025.00.0
180.01.00.025.0
190.00.026.00.0
201.01.00.024.0
210.07.017.02.0
2225.00.00.01.0
2322.02.01.01.0
2422.00.03.01.0
256.52.52.514.5
PWM
ACGT
010.618-0.7190.268-1.048
02-0.4180.6360.187-1.394
031.093-1.394-1.394-0.651
040.294-1.394-1.3940.771
050.771-2.195-2.1950.479
060.187-2.1950.89-1.394
07-2.195-2.195-2.1951.299
08-0.651-0.230.945-2.195
091.299-2.195-2.195-2.195
10-2.1951.299-2.195-2.195
111.299-2.195-2.195-2.195
12-2.1951.261-2.195-1.394
13-2.1951.222-1.394-1.394
14-2.195-2.195-2.1951.299
151.299-2.195-2.195-2.195
16-2.195-0.9551.222-2.195
17-2.195-1.3941.261-2.195
18-2.195-1.394-2.1951.261
19-2.195-2.1951.299-2.195
20-1.394-1.394-2.1951.222
21-2.1950.0660.89-0.955
221.261-2.195-2.195-1.394
231.138-0.955-1.394-1.394
241.138-2.195-0.651-1.394
250.0-0.792-0.7920.739