Transcription factor | T | ||||||||
Model | BRAC_MOUSE.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 25 | ||||||||
Quality | D | ||||||||
Consensus | vSAWARTSACACCTAGGTGTSAAAW | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 26 | ||||||||
TF family | Brachyury-related factors{6.5.1} | ||||||||
TF subfamily | T (Brachyury){6.5.1.0.1} | ||||||||
MGI | 98472 | ||||||||
EntrezGene | 20997 | ||||||||
UniProt ID | BRAC_MOUSE | ||||||||
UniProt AC | P20293 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 12.75 | 2.75 | 8.75 | 1.75 |
02 | 4.0 | 13.0 | 8.0 | 1.0 |
03 | 21.0 | 1.0 | 1.0 | 3.0 |
04 | 9.0 | 1.0 | 1.0 | 15.0 |
05 | 15.0 | 0.0 | 0.0 | 11.0 |
06 | 8.0 | 0.0 | 17.0 | 1.0 |
07 | 0.0 | 0.0 | 0.0 | 26.0 |
08 | 3.0 | 5.0 | 18.0 | 0.0 |
09 | 26.0 | 0.0 | 0.0 | 0.0 |
10 | 0.0 | 26.0 | 0.0 | 0.0 |
11 | 26.0 | 0.0 | 0.0 | 0.0 |
12 | 0.0 | 25.0 | 0.0 | 1.0 |
13 | 0.0 | 24.0 | 1.0 | 1.0 |
14 | 0.0 | 0.0 | 0.0 | 26.0 |
15 | 26.0 | 0.0 | 0.0 | 0.0 |
16 | 0.0 | 2.0 | 24.0 | 0.0 |
17 | 0.0 | 1.0 | 25.0 | 0.0 |
18 | 0.0 | 1.0 | 0.0 | 25.0 |
19 | 0.0 | 0.0 | 26.0 | 0.0 |
20 | 1.0 | 1.0 | 0.0 | 24.0 |
21 | 0.0 | 7.0 | 17.0 | 2.0 |
22 | 25.0 | 0.0 | 0.0 | 1.0 |
23 | 22.0 | 2.0 | 1.0 | 1.0 |
24 | 22.0 | 0.0 | 3.0 | 1.0 |
25 | 6.5 | 2.5 | 2.5 | 14.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.618 | -0.719 | 0.268 | -1.048 |
02 | -0.418 | 0.636 | 0.187 | -1.394 |
03 | 1.093 | -1.394 | -1.394 | -0.651 |
04 | 0.294 | -1.394 | -1.394 | 0.771 |
05 | 0.771 | -2.195 | -2.195 | 0.479 |
06 | 0.187 | -2.195 | 0.89 | -1.394 |
07 | -2.195 | -2.195 | -2.195 | 1.299 |
08 | -0.651 | -0.23 | 0.945 | -2.195 |
09 | 1.299 | -2.195 | -2.195 | -2.195 |
10 | -2.195 | 1.299 | -2.195 | -2.195 |
11 | 1.299 | -2.195 | -2.195 | -2.195 |
12 | -2.195 | 1.261 | -2.195 | -1.394 |
13 | -2.195 | 1.222 | -1.394 | -1.394 |
14 | -2.195 | -2.195 | -2.195 | 1.299 |
15 | 1.299 | -2.195 | -2.195 | -2.195 |
16 | -2.195 | -0.955 | 1.222 | -2.195 |
17 | -2.195 | -1.394 | 1.261 | -2.195 |
18 | -2.195 | -1.394 | -2.195 | 1.261 |
19 | -2.195 | -2.195 | 1.299 | -2.195 |
20 | -1.394 | -1.394 | -2.195 | 1.222 |
21 | -2.195 | 0.066 | 0.89 | -0.955 |
22 | 1.261 | -2.195 | -2.195 | -1.394 |
23 | 1.138 | -0.955 | -1.394 | -1.394 |
24 | 1.138 | -2.195 | -0.651 | -1.394 |
25 | 0.0 | -0.792 | -0.792 | 0.739 |