Model info
| Transcription factor | T | ||||||||
| Model | BRAC_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 25 | ||||||||
| Quality | D | ||||||||
| Consensus | vSAWARTSACACCTAGGTGTSAAAW | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26 | ||||||||
| TF family | Brachyury-related factors{6.5.1} | ||||||||
| TF subfamily | T (Brachyury){6.5.1.0.1} | ||||||||
| HGNC | 11515 | ||||||||
| EntrezGene | 6862 | ||||||||
| UniProt ID | BRAC_HUMAN | ||||||||
| UniProt AC | O15178 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 12.75 | 2.75 | 8.75 | 1.75 |
| 02 | 4.0 | 13.0 | 8.0 | 1.0 |
| 03 | 21.0 | 1.0 | 1.0 | 3.0 |
| 04 | 9.0 | 1.0 | 1.0 | 15.0 |
| 05 | 15.0 | 0.0 | 0.0 | 11.0 |
| 06 | 8.0 | 0.0 | 17.0 | 1.0 |
| 07 | 0.0 | 0.0 | 0.0 | 26.0 |
| 08 | 3.0 | 5.0 | 18.0 | 0.0 |
| 09 | 26.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.0 | 26.0 | 0.0 | 0.0 |
| 11 | 26.0 | 0.0 | 0.0 | 0.0 |
| 12 | 0.0 | 25.0 | 0.0 | 1.0 |
| 13 | 0.0 | 24.0 | 1.0 | 1.0 |
| 14 | 0.0 | 0.0 | 0.0 | 26.0 |
| 15 | 26.0 | 0.0 | 0.0 | 0.0 |
| 16 | 0.0 | 2.0 | 24.0 | 0.0 |
| 17 | 0.0 | 1.0 | 25.0 | 0.0 |
| 18 | 0.0 | 1.0 | 0.0 | 25.0 |
| 19 | 0.0 | 0.0 | 26.0 | 0.0 |
| 20 | 1.0 | 1.0 | 0.0 | 24.0 |
| 21 | 0.0 | 7.0 | 17.0 | 2.0 |
| 22 | 25.0 | 0.0 | 0.0 | 1.0 |
| 23 | 22.0 | 2.0 | 1.0 | 1.0 |
| 24 | 22.0 | 0.0 | 3.0 | 1.0 |
| 25 | 6.5 | 2.5 | 2.5 | 14.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.618 | -0.719 | 0.268 | -1.048 |
| 02 | -0.418 | 0.636 | 0.187 | -1.394 |
| 03 | 1.093 | -1.394 | -1.394 | -0.651 |
| 04 | 0.294 | -1.394 | -1.394 | 0.771 |
| 05 | 0.771 | -2.195 | -2.195 | 0.479 |
| 06 | 0.187 | -2.195 | 0.89 | -1.394 |
| 07 | -2.195 | -2.195 | -2.195 | 1.299 |
| 08 | -0.651 | -0.23 | 0.945 | -2.195 |
| 09 | 1.299 | -2.195 | -2.195 | -2.195 |
| 10 | -2.195 | 1.299 | -2.195 | -2.195 |
| 11 | 1.299 | -2.195 | -2.195 | -2.195 |
| 12 | -2.195 | 1.261 | -2.195 | -1.394 |
| 13 | -2.195 | 1.222 | -1.394 | -1.394 |
| 14 | -2.195 | -2.195 | -2.195 | 1.299 |
| 15 | 1.299 | -2.195 | -2.195 | -2.195 |
| 16 | -2.195 | -0.955 | 1.222 | -2.195 |
| 17 | -2.195 | -1.394 | 1.261 | -2.195 |
| 18 | -2.195 | -1.394 | -2.195 | 1.261 |
| 19 | -2.195 | -2.195 | 1.299 | -2.195 |
| 20 | -1.394 | -1.394 | -2.195 | 1.222 |
| 21 | -2.195 | 0.066 | 0.89 | -0.955 |
| 22 | 1.261 | -2.195 | -2.195 | -1.394 |
| 23 | 1.138 | -0.955 | -1.394 | -1.394 |
| 24 | 1.138 | -2.195 | -0.651 | -1.394 |
| 25 | 0.0 | -0.792 | -0.792 | 0.739 |