Model info
| Transcription factor | Arntl | ||||||||
| Model | BMAL1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | dGvWCACGTGAChS | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 15 | ||||||||
| TF family | PAS domain factors{1.2.5} | ||||||||
| TF subfamily | Arnt-like factors{1.2.5.2} | ||||||||
| MGI | 1096381 | ||||||||
| EntrezGene | 11865 | ||||||||
| UniProt ID | BMAL1_MOUSE | ||||||||
| UniProt AC | Q9WTL8 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.36 | 1.899 | 4.432 | 6.273 |
| 02 | 0.576 | 0.0 | 13.353 | 1.036 |
| 03 | 4.719 | 2.187 | 7.022 | 1.036 |
| 04 | 9.094 | 0.0 | 2.187 | 3.683 |
| 05 | 0.0 | 14.388 | 0.0 | 0.576 |
| 06 | 14.964 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 14.964 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 14.964 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 14.964 |
| 10 | 0.0 | 0.0 | 14.964 | 0.0 |
| 11 | 11.165 | 0.0 | 3.799 | 0.0 |
| 12 | 1.151 | 11.626 | 1.151 | 1.036 |
| 13 | 2.072 | 6.906 | 1.151 | 4.835 |
| 14 | 1.151 | 10.014 | 3.799 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.375 | -0.539 | 0.145 | 0.453 |
| 02 | -1.261 | -1.877 | 1.156 | -0.948 |
| 03 | 0.2 | -0.434 | 0.555 | -0.948 |
| 04 | 0.794 | -1.877 | -0.434 | -0.013 |
| 05 | -1.877 | 1.227 | -1.877 | -1.261 |
| 06 | 1.264 | -1.877 | -1.877 | -1.877 |
| 07 | -1.877 | 1.264 | -1.877 | -1.877 |
| 08 | -1.877 | -1.877 | 1.264 | -1.877 |
| 09 | -1.877 | -1.877 | -1.877 | 1.264 |
| 10 | -1.877 | -1.877 | 1.264 | -1.877 |
| 11 | 0.986 | -1.877 | 0.013 | -1.877 |
| 12 | -0.883 | 1.024 | -0.883 | -0.948 |
| 13 | -0.475 | 0.54 | -0.883 | 0.221 |
| 14 | -0.883 | 0.884 | 0.013 | -1.877 |