Model info
Transcription factorARNTL
ModelBMAL1_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length14
Quality
C
ConsensusdGvWCACGTGAChS
wAUC
Best AUC
Benchmark datasets
Aligned words15
TF familyPAS domain factors{1.2.5}
TF subfamilyArnt-like factors{1.2.5.2}
HGNC701
EntrezGene406
UniProt IDBMAL1_HUMAN
UniProt ACO00327
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.3051
0.0005 5.2071
0.0001 7.0601
PCM
ACGT
012.361.8994.4326.273
020.5760.013.3531.036
034.7192.1877.0221.036
049.0940.02.1873.683
050.014.3880.00.576
0614.9640.00.00.0
070.014.9640.00.0
080.00.014.9640.0
090.00.00.014.964
100.00.014.9640.0
1111.1650.03.7990.0
121.15111.6261.1511.036
132.0726.9061.1514.835
141.15110.0143.7990.0
PWM
ACGT
01-0.375-0.5390.1450.453
02-1.261-1.8771.156-0.948
030.2-0.4340.555-0.948
040.794-1.877-0.434-0.013
05-1.8771.227-1.877-1.261
061.264-1.877-1.877-1.877
07-1.8771.264-1.877-1.877
08-1.877-1.8771.264-1.877
09-1.877-1.877-1.8771.264
10-1.877-1.8771.264-1.877
110.986-1.8770.013-1.877
12-0.8831.024-0.883-0.948
13-0.4750.54-0.8830.221
14-0.8830.8840.013-1.877