Transcription factor | ARNTL | ||||||||
Model | BMAL1_HUMAN.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 14 | ||||||||
Quality | C | ||||||||
Consensus | dGvWCACGTGAChS | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 15 | ||||||||
TF family | PAS domain factors{1.2.5} | ||||||||
TF subfamily | Arnt-like factors{1.2.5.2} | ||||||||
HGNC | 701 | ||||||||
EntrezGene | 406 | ||||||||
UniProt ID | BMAL1_HUMAN | ||||||||
UniProt AC | O00327 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2.36 | 1.899 | 4.432 | 6.273 |
02 | 0.576 | 0.0 | 13.353 | 1.036 |
03 | 4.719 | 2.187 | 7.022 | 1.036 |
04 | 9.094 | 0.0 | 2.187 | 3.683 |
05 | 0.0 | 14.388 | 0.0 | 0.576 |
06 | 14.964 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 14.964 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 14.964 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 14.964 |
10 | 0.0 | 0.0 | 14.964 | 0.0 |
11 | 11.165 | 0.0 | 3.799 | 0.0 |
12 | 1.151 | 11.626 | 1.151 | 1.036 |
13 | 2.072 | 6.906 | 1.151 | 4.835 |
14 | 1.151 | 10.014 | 3.799 | 0.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.375 | -0.539 | 0.145 | 0.453 |
02 | -1.261 | -1.877 | 1.156 | -0.948 |
03 | 0.2 | -0.434 | 0.555 | -0.948 |
04 | 0.794 | -1.877 | -0.434 | -0.013 |
05 | -1.877 | 1.227 | -1.877 | -1.261 |
06 | 1.264 | -1.877 | -1.877 | -1.877 |
07 | -1.877 | 1.264 | -1.877 | -1.877 |
08 | -1.877 | -1.877 | 1.264 | -1.877 |
09 | -1.877 | -1.877 | -1.877 | 1.264 |
10 | -1.877 | -1.877 | 1.264 | -1.877 |
11 | 0.986 | -1.877 | 0.013 | -1.877 |
12 | -0.883 | 1.024 | -0.883 | -0.948 |
13 | -0.475 | 0.54 | -0.883 | 0.221 |
14 | -0.883 | 0.884 | 0.013 | -1.877 |