Model info
| Transcription factor | BARX1 | ||||||||
| Model | BARX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | TAATYGnTWTTTAATbR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 3126 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | BARX{3.1.2.2} | ||||||||
| HGNC | 955 | ||||||||
| EntrezGene | 56033 | ||||||||
| UniProt ID | BARX1_HUMAN | ||||||||
| UniProt AC | Q9HBU1 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 65.5 | 2.5 | 2.5 | 3055.5 |
| 02 | 3109.75 | 1.75 | 9.75 | 4.75 |
| 03 | 3121.5 | 1.5 | 1.5 | 1.5 |
| 04 | 129.5 | 49.5 | 237.5 | 2709.5 |
| 05 | 30.75 | 1491.75 | 614.75 | 988.75 |
| 06 | 155.25 | 132.25 | 2690.25 | 148.25 |
| 07 | 593.25 | 575.25 | 975.25 | 982.25 |
| 08 | 347.0 | 120.0 | 45.0 | 2614.0 |
| 09 | 1775.0 | 45.0 | 18.0 | 1288.0 |
| 10 | 582.0 | 34.0 | 67.0 | 2443.0 |
| 11 | 319.0 | 46.0 | 45.0 | 2716.0 |
| 12 | 6.0 | 17.0 | 0.0 | 3103.0 |
| 13 | 3094.25 | 2.25 | 21.25 | 8.25 |
| 14 | 3116.0 | 1.0 | 7.0 | 2.0 |
| 15 | 54.0 | 126.0 | 180.0 | 2766.0 |
| 16 | 163.5 | 580.5 | 1101.5 | 1280.5 |
| 17 | 621.25 | 183.25 | 1959.25 | 362.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.451 | -5.157 | -5.157 | 1.362 |
| 02 | 1.379 | -5.339 | -4.199 | -4.752 |
| 03 | 1.383 | -5.408 | -5.408 | -5.408 |
| 04 | -1.785 | -2.722 | -1.185 | 1.241 |
| 05 | -3.175 | 0.645 | -0.239 | 0.235 |
| 06 | -1.606 | -1.764 | 1.234 | -1.651 |
| 07 | -0.275 | -0.305 | 0.221 | 0.228 |
| 08 | -0.809 | -1.86 | -2.813 | 1.206 |
| 09 | 0.819 | -2.813 | -3.667 | 0.499 |
| 10 | -0.294 | -3.08 | -2.43 | 1.138 |
| 11 | -0.892 | -2.792 | -2.813 | 1.244 |
| 12 | -4.583 | -3.719 | -5.965 | 1.377 |
| 13 | 1.374 | -5.214 | -3.517 | -4.335 |
| 14 | 1.381 | -5.561 | -4.465 | -5.275 |
| 15 | -2.638 | -1.812 | -1.46 | 1.262 |
| 16 | -1.555 | -0.296 | 0.342 | 0.493 |
| 17 | -0.229 | -1.442 | 0.918 | -0.766 |