Model info
| Transcription factor | BARHL1 | ||||||||
| Model | BARH1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | TAAWYGbYnhTWA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 5695 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | BARHL{3.1.2.1} | ||||||||
| HGNC | 953 | ||||||||
| EntrezGene | 56751 | ||||||||
| UniProt ID | BARH1_HUMAN | ||||||||
| UniProt AC | Q9BZE3 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 42.25 | 2.25 | 3.25 | 5634.25 |
| 02 | 5652.0 | 0.0 | 3.0 | 27.0 |
| 03 | 5679.0 | 0.0 | 2.0 | 1.0 |
| 04 | 2749.0 | 21.0 | 174.0 | 2738.0 |
| 05 | 201.0 | 2455.0 | 161.0 | 2865.0 |
| 06 | 370.0 | 5.0 | 5196.0 | 111.0 |
| 07 | 736.0 | 2072.0 | 1783.0 | 1091.0 |
| 08 | 352.0 | 2030.0 | 350.0 | 2950.0 |
| 09 | 956.0 | 1914.0 | 1840.0 | 972.0 |
| 10 | 1231.5 | 1931.5 | 497.5 | 2021.5 |
| 11 | 705.25 | 337.25 | 124.25 | 4515.25 |
| 12 | 4133.25 | 98.25 | 94.25 | 1356.25 |
| 13 | 4879.0 | 114.0 | 111.0 | 578.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -3.467 | -5.776 | -5.572 | 1.377 |
| 02 | 1.38 | -6.49 | -5.619 | -3.887 |
| 03 | 1.385 | -6.49 | -5.834 | -6.109 |
| 04 | 0.659 | -4.118 | -2.089 | 0.655 |
| 05 | -1.946 | 0.546 | -2.166 | 0.701 |
| 06 | -1.341 | -5.292 | 1.296 | -2.531 |
| 07 | -0.656 | 0.377 | 0.227 | -0.263 |
| 08 | -1.391 | 0.357 | -1.396 | 0.73 |
| 09 | -0.395 | 0.298 | 0.258 | -0.379 |
| 10 | -0.143 | 0.307 | -1.046 | 0.352 |
| 11 | -0.699 | -1.433 | -2.421 | 1.155 |
| 12 | 1.067 | -2.651 | -2.692 | -0.046 |
| 13 | 1.233 | -2.505 | -2.531 | -0.897 |