Model info
| Transcription factor | ATOH1 | ||||||||
| Model | ATOH1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | bvMCATATSbY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 577 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors{1.2.3.4} | ||||||||
| HGNC | 797 | ||||||||
| EntrezGene | 474 | ||||||||
| UniProt ID | ATOH1_HUMAN | ||||||||
| UniProt AC | Q92858 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 51.75 | 236.75 | 53.75 | 218.75 |
| 02 | 271.75 | 49.75 | 194.75 | 44.75 |
| 03 | 278.0 | 245.0 | 14.0 | 24.0 |
| 04 | 14.5 | 529.5 | 5.5 | 11.5 |
| 05 | 514.0 | 29.0 | 0.0 | 18.0 |
| 06 | 13.0 | 50.0 | 45.0 | 453.0 |
| 07 | 426.0 | 114.0 | 0.0 | 21.0 |
| 08 | 16.75 | 42.75 | 4.75 | 496.75 |
| 09 | 19.5 | 49.5 | 446.5 | 45.5 |
| 10 | 30.75 | 171.75 | 69.75 | 288.75 |
| 11 | 40.75 | 193.75 | 37.75 | 288.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.978 | 0.519 | -0.941 | 0.44 |
| 02 | 0.656 | -1.016 | 0.325 | -1.119 |
| 03 | 0.679 | 0.553 | -2.209 | -1.713 |
| 04 | -2.177 | 1.32 | -2.997 | -2.383 |
| 05 | 1.291 | -1.534 | -4.496 | -1.98 |
| 06 | -2.275 | -1.011 | -1.113 | 1.165 |
| 07 | 1.104 | -0.205 | -4.496 | -1.837 |
| 08 | -2.046 | -1.163 | -3.109 | 1.257 |
| 09 | -1.906 | -1.021 | 1.15 | -1.103 |
| 10 | -1.479 | 0.201 | -0.687 | 0.716 |
| 11 | -1.209 | 0.32 | -1.283 | 0.716 |