Transcription factor | ARNT2 | ||||||||
Model | ARNT2_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 12 | ||||||||
Quality | D | ||||||||
Consensus | RnSGTGGvRSRS | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 18 | ||||||||
TF family | PAS domain factors{1.2.5} | ||||||||
TF subfamily | Arnt-like factors{1.2.5.2} | ||||||||
HGNC | 16876 | ||||||||
EntrezGene | 9915 | ||||||||
UniProt ID | ARNT2_HUMAN | ||||||||
UniProt AC | Q9HBZ2 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 3.479 | 1.491 | 10.546 | 2.485 |
02 | 2.982 | 5.08 | 5.963 | 3.975 |
03 | 0.0 | 11.926 | 3.975 | 2.098 |
04 | 0.0 | 0.994 | 17.006 | 0.0 |
05 | 0.0 | 0.0 | 0.994 | 17.006 |
06 | 0.0 | 0.994 | 17.006 | 0.0 |
07 | 0.994 | 0.0 | 15.902 | 1.104 |
08 | 2.982 | 5.963 | 7.067 | 1.988 |
09 | 10.049 | 0.0 | 4.969 | 2.982 |
10 | 0.0 | 5.963 | 10.049 | 1.988 |
11 | 7.067 | 0.0 | 8.945 | 1.988 |
12 | 2.485 | 10.546 | 3.479 | 1.491 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.218 | -0.858 | 0.769 | -0.488 |
02 | -0.344 | 0.105 | 0.247 | -0.106 |
03 | -1.978 | 0.885 | -0.106 | -0.616 |
04 | -1.978 | -1.113 | 1.222 | -1.978 |
05 | -1.978 | -1.978 | -1.113 | 1.222 |
06 | -1.978 | -1.113 | 1.222 | -1.978 |
07 | -1.113 | -1.978 | 1.158 | -1.05 |
08 | -0.344 | 0.247 | 0.4 | -0.656 |
09 | 0.724 | -1.978 | 0.086 | -0.344 |
10 | -1.978 | 0.247 | 0.724 | -0.656 |
11 | 0.4 | -1.978 | 0.616 | -0.656 |
12 | -0.488 | 0.769 | -0.218 | -0.858 |