Transcription factor | ARID5B | ||||||||
Model | ARI5B_HUMAN.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 13 | ||||||||
Quality | C | ||||||||
Consensus | nbYKnRTATTSKd | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 19 | ||||||||
TF family | ARID-related factors{3.7.1} | ||||||||
TF subfamily | ARID5{3.7.1.5} | ||||||||
HGNC | 17362 | ||||||||
EntrezGene | 84159 | ||||||||
UniProt ID | ARI5B_HUMAN | ||||||||
UniProt AC | Q14865 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 3.25 | 1.25 | 5.25 | 5.25 |
02 | 2.0 | 4.0 | 6.0 | 3.0 |
03 | 0.0 | 4.0 | 3.0 | 8.0 |
04 | 0.0 | 2.0 | 5.0 | 8.0 |
05 | 5.0 | 1.0 | 5.0 | 4.0 |
06 | 3.0 | 1.0 | 10.0 | 1.0 |
07 | 0.0 | 0.0 | 0.0 | 15.0 |
08 | 13.0 | 0.0 | 2.0 | 0.0 |
09 | 0.0 | 2.0 | 0.0 | 13.0 |
10 | 0.0 | 1.0 | 1.0 | 13.0 |
11 | 2.0 | 4.0 | 8.0 | 1.0 |
12 | 2.0 | 1.0 | 4.0 | 8.0 |
13 | 3.75 | 1.75 | 6.75 | 2.75 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.12 | -0.832 | 0.292 | 0.292 |
02 | -0.503 | 0.055 | 0.411 | -0.186 |
03 | -1.878 | 0.055 | -0.186 | 0.673 |
04 | -1.878 | -0.503 | 0.249 | 0.673 |
05 | 0.249 | -0.971 | 0.249 | 0.055 |
06 | -0.186 | -0.971 | 0.88 | -0.971 |
07 | -1.878 | -1.878 | -1.878 | 1.264 |
08 | 1.128 | -1.878 | -0.503 | -1.878 |
09 | -1.878 | -0.503 | -1.878 | 1.128 |
10 | -1.878 | -0.971 | -0.971 | 1.128 |
11 | -0.503 | 0.055 | 0.673 | -0.971 |
12 | -0.503 | -0.971 | 0.055 | 0.673 |
13 | 0.0 | -0.601 | 0.517 | -0.256 |