Model info
| Transcription factor | ARID3A | ||||||||
| Model | ARI3A_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | RATTAAA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 53 | ||||||||
| TF family | ARID-related factors{3.7.1} | ||||||||
| TF subfamily | ARID3{3.7.1.3} | ||||||||
| HGNC | 3031 | ||||||||
| EntrezGene | 1820 | ||||||||
| UniProt ID | ARI3A_HUMAN | ||||||||
| UniProt AC | Q99856 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 28.498 | 2.509 | 11.589 | 4.515 |
| 02 | 47.111 | 0.0 | 0.0 | 0.0 |
| 03 | 0.0 | 0.0 | 0.0 | 47.111 |
| 04 | 0.0 | 0.0 | 0.0 | 47.111 |
| 05 | 47.111 | 0.0 | 0.0 | 0.0 |
| 06 | 47.111 | 0.0 | 0.0 | 0.0 |
| 07 | 39.084 | 0.0 | 0.0 | 8.027 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.838 | -1.3 | -0.015 | -0.844 |
| 02 | 1.328 | -2.582 | -2.582 | -2.582 |
| 03 | -2.582 | -2.582 | -2.582 | 1.328 |
| 04 | -2.582 | -2.582 | -2.582 | 1.328 |
| 05 | 1.328 | -2.582 | -2.582 | -2.582 |
| 06 | 1.328 | -2.582 | -2.582 | -2.582 |
| 07 | 1.145 | -2.582 | -2.582 | -0.349 |