AP2C_HUMAN.H10MO.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

TFAP2C

Model

AP2C_HUMAN.H10MO.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

14

Quality

A

Consensus

vddSCCTGRGGShv

wAUC

0.8193851755779543

Best AUC

0.9000521863508143

Benchmark datasets

4

Aligned words

501

TF family

AP-2{1.3.1}

TF subfamily

AP-2gamma{1.3.1.0.3}

HGNC

11744

EntrezGene

7022

UniProt ID

AP2C_HUMAN

UniProt AC

Q92754

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.7091
0.0005	4.8401
0.0001	7.1471

PCM

	A	C	G	T
01	193.614	100.515	134.783	71.088
02	98.037	61.799	83.2	256.963
03	92.298	49.886	259.215	98.601
04	4.767	253.52	235.946	5.767
05	1.902	494.142	3.957	0.0
06	0.934	475.911	1.172	21.982
07	25.008	65.933	12.689	396.371
08	17.682	0.0	458.604	23.714
09	277.519	12.699	207.919	1.863
10	36.72	0.0	462.294	0.985
11	0.0	0.0	499.058	0.942
12	14.466	309.124	170.509	5.902
13	156.963	175.77	48.576	118.691
14	214.138	85.26	120.834	79.768

PWM

	A	C	G	T
01	0.433	-0.215	0.074	-0.555
02	-0.24	-0.692	-0.401	0.714
03	-0.299	-0.9	0.723	-0.234
04	-2.997	0.701	0.63	-2.85
05	-3.601	1.365	-3.134	-4.4
06	-3.929	1.328	-3.838	-1.682
07	-1.561	-0.629	-2.184	1.146
08	-1.884	-4.4	1.291	-1.611
09	0.791	-2.184	0.504	-3.612
10	-1.196	-4.4	1.299	-3.909
11	-4.4	-4.4	1.375	-3.926
12	-2.067	0.898	0.307	-2.832
13	0.225	0.337	-0.926	-0.051
14	0.533	-0.377	-0.033	-0.442