Model info
| Transcription factor | TFAP2C | ||||||||
| Model | AP2C_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | nbnnnbbSCCYSRGGChdhbbbn | ||||||||
| wAUC | 0.8423164114246797 | ||||||||
| Best AUC | 0.8801512488728958 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 517 | ||||||||
| TF family | AP-2{1.3.1} | ||||||||
| TF subfamily | AP-2gamma{1.3.1.0.3} | ||||||||
| HGNC | 11744 | ||||||||
| EntrezGene | 7022 | ||||||||
| UniProt ID | AP2C_HUMAN | ||||||||
| UniProt AC | Q92754 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 7.746 | 15.673 | 56.826 | 11.999 | 21.037 | 34.587 | 19.85 | 39.943 | 14.551 | 51.017 | 27.83 | 21.226 | 8.182 | 16.948 | 122.387 | 28.199 |
| 02 | 5.801 | 5.922 | 25.995 | 13.798 | 22.905 | 43.994 | 21.761 | 29.564 | 57.142 | 41.353 | 107.112 | 21.285 | 12.77 | 31.766 | 39.258 | 17.573 |
| 03 | 9.787 | 13.235 | 13.618 | 61.978 | 21.39 | 47.583 | 6.862 | 47.2 | 76.174 | 60.499 | 38.239 | 19.214 | 2.849 | 33.522 | 17.341 | 28.509 |
| 04 | 11.495 | 34.959 | 49.643 | 14.103 | 42.607 | 65.619 | 12.786 | 33.828 | 24.833 | 22.922 | 20.477 | 7.828 | 8.49 | 27.589 | 48.464 | 72.357 |
| 05 | 11.485 | 15.618 | 29.14 | 31.181 | 18.717 | 54.222 | 7.786 | 70.363 | 9.831 | 44.317 | 27.383 | 49.841 | 9.543 | 56.995 | 12.782 | 48.796 |
| 06 | 0.0 | 4.026 | 38.616 | 6.934 | 27.119 | 56.808 | 45.342 | 41.883 | 4.851 | 25.606 | 41.956 | 4.679 | 20.164 | 39.734 | 122.454 | 17.829 |
| 07 | 2.08 | 23.164 | 24.714 | 2.177 | 47.105 | 46.889 | 32.18 | 0.0 | 9.793 | 209.518 | 29.057 | 0.0 | 0.0 | 52.678 | 18.646 | 0.0 |
| 08 | 0.0 | 21.372 | 0.0 | 37.605 | 2.303 | 264.884 | 0.0 | 65.062 | 0.0 | 101.583 | 0.0 | 3.014 | 0.0 | 0.933 | 0.0 | 1.244 |
| 09 | 0.0 | 0.939 | 0.0 | 1.365 | 0.0 | 311.965 | 1.912 | 74.895 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 12.816 | 1.031 | 93.077 |
| 10 | 0.0 | 0.0 | 0.0 | 0.0 | 9.114 | 85.644 | 13.066 | 217.895 | 0.0 | 1.912 | 0.0 | 1.031 | 5.511 | 57.01 | 16.74 | 90.077 |
| 11 | 1.901 | 6.503 | 6.222 | 0.0 | 8.703 | 52.156 | 81.661 | 2.047 | 2.922 | 9.916 | 16.968 | 0.0 | 7.596 | 73.436 | 203.938 | 24.033 |
| 12 | 15.491 | 0.0 | 5.631 | 0.0 | 98.832 | 1.197 | 37.908 | 4.073 | 199.582 | 2.762 | 105.475 | 0.969 | 16.07 | 0.0 | 10.01 | 0.0 |
| 13 | 2.002 | 1.039 | 323.722 | 3.212 | 0.0 | 0.0 | 3.958 | 0.0 | 0.966 | 0.0 | 158.059 | 0.0 | 0.0 | 0.0 | 5.043 | 0.0 |
| 14 | 0.0 | 0.0 | 2.967 | 0.0 | 0.0 | 0.0 | 0.0 | 1.039 | 1.277 | 6.933 | 436.89 | 45.681 | 1.085 | 0.0 | 0.0 | 2.127 |
| 15 | 0.0 | 1.277 | 0.0 | 1.085 | 0.949 | 5.985 | 0.0 | 0.0 | 13.609 | 350.368 | 71.845 | 4.035 | 1.244 | 44.624 | 2.979 | 0.0 |
| 16 | 1.889 | 7.045 | 1.968 | 4.899 | 95.919 | 179.171 | 21.408 | 105.755 | 2.883 | 39.465 | 7.946 | 24.53 | 0.0 | 1.943 | 2.093 | 1.085 |
| 17 | 18.33 | 17.422 | 42.701 | 22.238 | 116.076 | 16.044 | 5.347 | 90.158 | 14.365 | 6.076 | 4.852 | 8.121 | 34.753 | 18.564 | 48.976 | 33.976 |
| 18 | 31.776 | 39.771 | 24.393 | 87.585 | 16.659 | 7.766 | 3.18 | 30.501 | 22.269 | 18.341 | 28.811 | 32.454 | 30.704 | 20.308 | 27.511 | 75.971 |
| 19 | 14.065 | 10.301 | 39.267 | 37.774 | 17.578 | 16.755 | 15.496 | 36.356 | 12.772 | 12.08 | 34.159 | 24.884 | 16.035 | 48.114 | 66.288 | 96.074 |
| 20 | 9.744 | 15.795 | 23.161 | 11.751 | 6.92 | 23.346 | 34.84 | 22.145 | 15.352 | 49.72 | 65.026 | 25.112 | 4.886 | 58.434 | 82.96 | 48.808 |
| 21 | 8.013 | 9.66 | 15.348 | 3.881 | 26.272 | 29.203 | 46.925 | 44.895 | 23.299 | 38.151 | 73.502 | 71.036 | 3.88 | 21.612 | 44.978 | 37.345 |
| 22 | 14.611 | 18.246 | 19.7 | 8.907 | 30.883 | 30.337 | 10.168 | 27.238 | 57.67 | 29.234 | 52.47 | 41.379 | 13.757 | 37.737 | 46.891 | 58.771 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -1.354 | -0.674 | 0.596 | -0.934 | -0.386 | 0.104 | -0.443 | 0.247 | -0.746 | 0.489 | -0.11 | -0.377 | -1.302 | -0.598 | 1.36 | -0.097 |
| 02 | -1.628 | -1.608 | -0.178 | -0.798 | -0.302 | 0.342 | -0.353 | -0.051 | 0.602 | 0.281 | 1.227 | -0.374 | -0.873 | 0.02 | 0.23 | -0.562 |
| 03 | -1.13 | -0.839 | -0.811 | 0.683 | -0.369 | 0.42 | -1.469 | 0.412 | 0.888 | 0.659 | 0.204 | -0.475 | -2.276 | 0.073 | -0.575 | -0.087 |
| 04 | -0.975 | 0.115 | 0.462 | -0.777 | 0.311 | 0.739 | -0.872 | 0.082 | -0.223 | -0.302 | -0.412 | -1.344 | -1.267 | -0.119 | 0.438 | 0.837 |
| 05 | -0.976 | -0.677 | -0.065 | 0.002 | -0.5 | 0.55 | -1.349 | 0.809 | -1.126 | 0.35 | -0.126 | 0.466 | -1.155 | 0.599 | -0.872 | 0.445 |
| 06 | -4.397 | -1.966 | 0.213 | -1.46 | -0.136 | 0.596 | 0.372 | 0.294 | -1.794 | -0.193 | 0.295 | -1.828 | -0.427 | 0.242 | 1.36 | -0.548 |
| 07 | -2.547 | -0.291 | -0.227 | -2.508 | 0.41 | 0.406 | 0.033 | -4.397 | -1.13 | 1.896 | -0.068 | -4.397 | -4.397 | 0.521 | -0.504 | -4.397 |
| 08 | -4.397 | -0.37 | -4.397 | 0.187 | -2.46 | 2.13 | -4.397 | 0.731 | -4.397 | 1.174 | -4.397 | -2.226 | -4.397 | -3.172 | -4.397 | -2.961 |
| 09 | -4.397 | -3.168 | -4.397 | -2.889 | -4.397 | 2.294 | -2.617 | 0.871 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -0.87 | -3.1 | 1.087 |
| 10 | -4.397 | -4.397 | -4.397 | -4.397 | -1.199 | 1.004 | -0.851 | 1.935 | -4.397 | -2.617 | -4.397 | -3.1 | -1.676 | 0.6 | -0.61 | 1.055 |
| 11 | -2.622 | -1.52 | -1.562 | -4.397 | -1.243 | 0.511 | 0.957 | -2.56 | -2.253 | -1.118 | -0.596 | -4.397 | -1.373 | 0.851 | 1.869 | -0.255 |
| 12 | -0.685 | -4.397 | -1.655 | -4.397 | 1.147 | -2.99 | 0.195 | -1.955 | 1.848 | -2.303 | 1.212 | -3.145 | -0.65 | -4.397 | -1.109 | -4.397 |
| 13 | -2.579 | -3.094 | 2.331 | -2.169 | -4.397 | -4.397 | -1.981 | -4.397 | -3.147 | -4.397 | 1.615 | -4.397 | -4.397 | -4.397 | -1.758 | -4.397 |
| 14 | -4.397 | -4.397 | -2.24 | -4.397 | -4.397 | -4.397 | -4.397 | -3.094 | -2.941 | -1.46 | 2.63 | 0.38 | -3.063 | -4.397 | -4.397 | -2.528 |
| 15 | -4.397 | -2.941 | -4.397 | -3.063 | -3.16 | -1.598 | -4.397 | -4.397 | -0.812 | 2.41 | 0.829 | -1.963 | -2.961 | 0.357 | -2.236 | -4.397 |
| 16 | -2.627 | -1.444 | -2.594 | -1.785 | 1.117 | 1.74 | -0.369 | 1.214 | -2.265 | 0.235 | -1.33 | -0.235 | -4.397 | -2.604 | -2.542 | -3.063 |
| 17 | -0.521 | -0.571 | 0.313 | -0.331 | 1.307 | -0.651 | -1.704 | 1.055 | -0.759 | -1.584 | -1.794 | -1.309 | 0.109 | -0.508 | 0.449 | 0.087 |
| 18 | 0.02 | 0.242 | -0.24 | 1.027 | -0.614 | -1.352 | -2.178 | -0.02 | -0.33 | -0.52 | -0.076 | 0.041 | -0.013 | -0.42 | -0.122 | 0.885 |
| 19 | -0.779 | -1.081 | 0.23 | 0.191 | -0.562 | -0.609 | -0.685 | 0.154 | -0.873 | -0.927 | 0.092 | -0.221 | -0.652 | 0.431 | 0.749 | 1.119 |
| 20 | -1.135 | -0.666 | -0.291 | -0.954 | -1.461 | -0.283 | 0.111 | -0.335 | -0.694 | 0.464 | 0.73 | -0.212 | -1.788 | 0.624 | 0.973 | 0.445 |
| 21 | -1.322 | -1.143 | -0.694 | -1.999 | -0.167 | -0.063 | 0.406 | 0.363 | -0.285 | 0.201 | 0.852 | 0.818 | -1.999 | -0.359 | 0.364 | 0.18 |
| 22 | -0.742 | -0.525 | -0.45 | -1.221 | -0.008 | -0.025 | -1.094 | -0.132 | 0.611 | -0.062 | 0.517 | 0.282 | -0.801 | 0.19 | 0.406 | 0.63 |