Model info
| Transcription factor | Tfap2a | ||||||||
| Model | AP2A_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Consensus | SCCYGvGGS | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 1952 | ||||||||
| TF family | AP-2{1.3.1} | ||||||||
| TF subfamily | AP-2alpha{1.3.1.0.1} | ||||||||
| MGI | 104671 | ||||||||
| EntrezGene | 21418 | ||||||||
| UniProt ID | AP2A_MOUSE | ||||||||
| UniProt AC | P34056 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 30.068 | 764.3 | 1082.876 | 52.495 |
| 02 | 12.075 | 1790.45 | 97.048 | 30.167 |
| 03 | 25.3 | 1749.19 | 81.259 | 73.99 |
| 04 | 65.318 | 418.841 | 169.397 | 1276.184 |
| 05 | 0.0 | 0.0 | 1742.295 | 187.445 |
| 06 | 821.52 | 296.749 | 741.939 | 69.532 |
| 07 | 144.822 | 29.894 | 1745.53 | 9.494 |
| 08 | 38.302 | 28.532 | 1859.288 | 3.619 |
| 09 | 126.344 | 1035.541 | 698.289 | 69.566 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.718 | 0.459 | 0.806 | -2.187 |
| 02 | -3.546 | 1.309 | -1.588 | -2.715 |
| 03 | -2.88 | 1.285 | -1.762 | -1.854 |
| 04 | -1.975 | -0.141 | -1.039 | 0.97 |
| 05 | -5.546 | -5.546 | 1.281 | -0.939 |
| 06 | 0.531 | -0.484 | 0.429 | -1.914 |
| 07 | -1.194 | -2.724 | 1.283 | -3.75 |
| 08 | -2.489 | -2.768 | 1.346 | -4.476 |
| 09 | -1.329 | 0.762 | 0.369 | -1.914 |