Model info
| Transcription factor | Alx1 | ||||||||
| Model | ALX1_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | B | ||||||||
| Consensus | vTRATYGnATTA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 33 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | ALX{3.1.3.1} | ||||||||
| MGI | 104621 | ||||||||
| EntrezGene | 216285 | ||||||||
| UniProt ID | ALX1_MOUSE | ||||||||
| UniProt AC | Q8C8B0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 13.542 | 6.481 | 8.467 | 2.51 |
| 02 | 1.986 | 2.979 | 0.0 | 26.036 |
| 03 | 23.94 | 0.993 | 3.089 | 2.979 |
| 04 | 26.918 | 1.986 | 0.0 | 2.096 |
| 05 | 0.0 | 2.979 | 0.0 | 28.021 |
| 06 | 0.993 | 7.06 | 3.972 | 18.975 |
| 07 | 15.004 | 0.0 | 15.996 | 0.0 |
| 08 | 11.032 | 7.943 | 11.032 | 0.993 |
| 09 | 24.05 | 0.0 | 3.972 | 2.979 |
| 10 | 3.089 | 0.0 | 0.993 | 26.918 |
| 11 | 1.986 | 0.993 | 0.993 | 27.028 |
| 12 | 25.705 | 1.765 | 1.765 | 1.765 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.515 | -0.159 | 0.08 | -0.938 |
| 02 | -1.107 | -0.808 | -2.305 | 1.139 |
| 03 | 1.058 | -1.537 | -0.78 | -0.808 |
| 04 | 1.171 | -1.107 | -2.305 | -1.069 |
| 05 | -2.305 | -0.808 | -2.305 | 1.21 |
| 06 | -1.537 | -0.083 | -0.578 | 0.835 |
| 07 | 0.611 | -2.305 | 0.672 | -2.305 |
| 08 | 0.323 | 0.022 | 0.323 | -1.537 |
| 09 | 1.062 | -2.305 | -0.578 | -0.808 |
| 10 | -0.78 | -2.305 | -1.537 | 1.171 |
| 11 | -1.107 | -1.537 | -1.537 | 1.175 |
| 12 | 1.127 | -1.188 | -1.188 | -1.188 |