Model info
| Transcription factor | Rbpj | ||||||||
| Model | SUH_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | hRTGGGAAM | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 65 | ||||||||
| TF family | CSL-related factors{6.1.4} | ||||||||
| TF subfamily | M{6.1.4.1} | ||||||||
| MGI | 96522 | ||||||||
| EntrezGene | 19664 | ||||||||
| UniProt ID | SUH_MOUSE | ||||||||
| UniProt AC | P31266 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.529 | 36.134 | 5.203 | 16.134 |
| 02 | 14.535 | 6.279 | 41.512 | 2.674 |
| 03 | 3.023 | 1.977 | 0.581 | 59.419 |
| 04 | 2.093 | 1.047 | 60.814 | 1.047 |
| 05 | 4.186 | 1.047 | 54.651 | 5.116 |
| 06 | 3.023 | 1.047 | 60.93 | 0.0 |
| 07 | 58.837 | 1.047 | 3.023 | 2.093 |
| 08 | 60.0 | 0.0 | 5.0 | 0.0 |
| 09 | 32.733 | 18.198 | 1.686 | 12.384 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.702 | 0.765 | -1.018 | -0.007 |
| 02 | -0.104 | -0.859 | 0.9 | -1.537 |
| 03 | -1.447 | -1.745 | -2.365 | 1.252 |
| 04 | -1.707 | -2.113 | 1.274 | -2.113 |
| 05 | -1.196 | -2.113 | 1.17 | -1.032 |
| 06 | -1.447 | -2.113 | 1.276 | -2.808 |
| 07 | 1.242 | -2.113 | -1.447 | -1.707 |
| 08 | 1.261 | -2.808 | -1.051 | -2.808 |
| 09 | 0.669 | 0.107 | -1.846 | -0.253 |